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A package to custom built species-specific databases. FunctSNP provides a unified bioinformatics resource to link single nucleotide polymorphisms (SNPs) with functional knowledge (e.g., genes, pathways, ontologies). FunctSNP interfaces to local SNP customised databases which can be built for any species contained in the National Center for Biotechnology Information dbSNP database.

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FunctSNP classification

  • Animals
    • Homo sapiens

FunctSNP specifications

Unique identifier:
OMICS_01925
Interface:
Command line interface
Input data:
SNP IDs, Gene IDs, SNP locations
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Version:
1.0.3
Requirements:
DBI, RSQLite, utils

FunctSNP distribution

versioning

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FunctSNP support

Documentation

Maintainer

  • Than S. Watson-Haigh <>

Credits

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Publications

Institution(s)

CSIRO Livestock Industries, Davies Laboratory, University Drive, Townsville, Australia; Centre for Genetic Analysis and Applications, University of New England, Armidale, Australia

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