FunGAP specifications


Unique identifier OMICS_18965
Name FunGAP
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data Some genome assembly, Illumina-generated mRNA sequencing.
Input format FASTA, FASTQ
Output format GFF3, FASTA.
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes


  • Plants and Fungi
    • Saccharomyces cerevisiae




No version available


  • person_outline In-Geol Choi

Publication for FunGAP

FunGAP institution(s)
Department of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul, Korea; US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA; Department of Plant and Microbial Biology, University of California, Berkeley, CA, USA
FunGAP funding source(s)
Supported by the Cooperative Research Program for Agriculture Science and Technology Development (Project No. PJ01044003), Rural Development Administration, Republic of Korea; and School of Life Sciences and Biotechnology for BK21 PLUS, Korea University.

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