FunGAP specifications

Unique identifier:
OMICS_18965
Software type:
Pipeline/Workflow
Restrictions to use:
Academic or non-commercial use
Input format:
FASTA, FASTQ
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes
Name:
FunGAP
Interface:
Command line interface
Input data:
Some genome assembly, Illumina-generated mRNA sequencing.
Output format:
GFF3, FASTA.
Programming languages:
Python
Stability:
Stable
  • Fungi
    • Saccharomyces cerevisiae

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FunGAP distribution

download

FunGAP support

Maintainer

  • In-Geol Choi <>

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Publications

Institution(s)

Department of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul, Korea; US Department of Energy Joint Genome Institute, Walnut Creek, CA, USA; Department of Plant and Microbial Biology, University of California, Berkeley, CA, USA

Funding source(s)

Supported by the Cooperative Research Program for Agriculture Science and Technology Development (Project No. PJ01044003), Rural Development Administration, Republic of Korea; and School of Life Sciences and Biotechnology for BK21 PLUS, Korea University.

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