FGP specifications

Information


Unique identifier OMICS_14961
Name FGP
Alternative name FunGene Pipeline
Interface Web user interface
Restrictions to use None
Programming languages Python
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline James Cole <>

Information


Unique identifier OMICS_14961
Name FGP
Alternative name FunGene Pipeline
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements RDPTools, HMMER3, Infernal, USEARCH
Maintained Yes

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Maintainer


  • person_outline James Cole <>

FGP articles

FGP institution(s)
Center for Microbial Ecology, Michigan State University, East Lansing, MI, USA; Department of Computer Science and Engineering, Michigan State University, East Lansing, MI, USA; Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, USA; Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI, USA
FGP funding source(s)
This work was supported by grants from the Office of Science (BER), U.S. Department of Energy, Grant DE-FG02-99ER62848 and Bioenergy Center Grant DE-FC02-07ER64494, Superfund Research Program grant P42 ES004911 from the U. S. National Institute of Environmental Health Sciences, National Research Initiative 2008-35107-04542 from the USDA National Institute of Food and Agriculture and NIH Human Microbiome Project Demonstration Project UH3 DK083993.

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