FGP specifications

Unique identifier:
OMICS_14961
Interface:
Web user interface
Programming languages:
Python
Stability:
Stable
Name:
FunGene Pipeline
Restrictions to use:
None
Computer skills:
Basic
Maintained:
Yes

FGP specifications

Unique identifier:
OMICS_14961
Software type:
Pipeline/Workflow
Restrictions to use:
None
Programming languages:
Python
Stability:
Stable
Maintained:
Yes
Name:
FunGene Pipeline
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
RDPTools, HMMER3, Infernal, USEARCH

versioning

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FGP distribution

download

FGP support

Maintainer

  • James Cole <>
  • James Cole <>

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Credits

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Publications

Institution(s)

Center for Microbial Ecology, Michigan State University, East Lansing, MI, USA; Department of Computer Science and Engineering, Michigan State University, East Lansing, MI, USA; Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, USA; Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI, USA

Funding source(s)

This work was supported by grants from the Office of Science (BER), U.S. Department of Energy, Grant DE-FG02-99ER62848 and Bioenergy Center Grant DE-FC02-07ER64494, Superfund Research Program grant P42 ES004911 from the U. S. National Institute of Environmental Health Sciences, National Research Initiative 2008-35107-04542 from the USDA National Institute of Food and Agriculture and NIH Human Microbiome Project Demonstration Project UH3 DK083993.

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