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Fungi genome databases | Annotation

Fungi are the major decomposers of plant biomass in the biosphere and they use plant biomass as their predominant carbon source. Fungi cannot import polysaccharides into the cell, but instead secrete a diverse set of enzymes to breakdown the…
GenBank
Dataset

GenBank

A comprehensive database that contains publicly available nucleotide sequences…

A comprehensive database that contains publicly available nucleotide sequences for over 300 000 formally described species. These sequences are obtained primarily through submissions from individual…

NCBI
Dataset

NCBI National Center for Biotechnology Information

Supplies several online resources for biological information. NCBI is a…

Supplies several online resources for biological information. NCBI is a web-based platform gathering information, tools, and functions that can be useful for researchers about biology. It offers user…

Ensembl
Dataset

Ensembl

A genomic interpretation system providing the most up-to-date annotations,…

A genomic interpretation system providing the most up-to-date annotations, querying tools and access methods for chordates and key model organisms. The REST server, which allows programs written in…

CGD
Dataset

CGD Candida Genome Database

Provides gene, protein and sequence information for multiple Candida species.…

Provides gene, protein and sequence information for multiple Candida species. CGD contains web-based tools for accessing, analyzing and exploring these data, to facilitate and accelerate research…

RefSeq
Dataset

RefSeq Reference Sequence

Maintains and curates a publicly available database of annotated genomic,…

Maintains and curates a publicly available database of annotated genomic, transcript, and protein sequence records. The RefSeq project leverages the data submitted to the International Nucleotide…

Gene
Dataset

Gene

Integrates gene-specific information from multiple data sources. NCBI Reference…

Integrates gene-specific information from multiple data sources. NCBI Reference Sequence (RefSeq) genomes for viruses, prokaryotes and eukaryotes are the primary foundation for Gene records in that…

EuPathDB
Dataset

EuPathDB

Allows users to search eukaryotic pathogens. EuPathDB includes visualization…

Allows users to search eukaryotic pathogens. EuPathDB includes visualization and analysis tools to better understand data mining. It assists users to discover meaningful biological relationships. It…

YGOB
Dataset

YGOB Yeast Gene Order Browser

Facilitate visual comparisons and computational analysis of synteny…

Facilitate visual comparisons and computational analysis of synteny relationships in yeasts.

MycoCosm
Dataset

MycoCosm

Gives access to genomics data and allows their analysis using web-based…

Gives access to genomics data and allows their analysis using web-based analytical tools. MycoCosm is an integrated fungal genomics resource that hosts more than 250 publicly available fungal…

Ensembl Genomes
Dataset

Ensembl Genomes

An integrating resource for genome-scale data from non-vertebrate species.

An integrating resource for genome-scale data from non-vertebrate species.

MicrobesOnline
Dataset

MicrobesOnline

Includes over 1000 complete genomes of bacteria, archaea and fungi and…

Includes over 1000 complete genomes of bacteria, archaea and fungi and thousands of expression microarrays from diverse organisms. To assist in annotating genes and in reconstructing their…

AspGD
Dataset

AspGD Aspergillus Genome Database

A freely available web-based resource that was designed for Aspergillus…

A freely available web-based resource that was designed for Aspergillus researchers and is also a valuable source of information for the entire fungal research community. In addition to being a…

IMG/M
Dataset

IMG/M Integrated Microbial Genomes with Microbiome Samples

A database for analysis and annotation of genome and metagenome datasets in a…

A database for analysis and annotation of genome and metagenome datasets in a comprehensive comparative context. IMG/M includes archaea, bacteria, eukarya, plasmids, viruses, genome fragments…

Encephalitozoon…
Dataset

Encephalitozoon cuniculi

A database offering the genome sequence of Encephalitozoon cuniculi, a…

A database offering the genome sequence of Encephalitozoon cuniculi, a eukaryotic organism belonging to the phylum Microsporidia. It infects various mammals, including humans, and can cause digestive…

RSIADB
Dataset

RSIADB

A collective resource for rice sheath blight pathogen, Rhizoctonia solani AG1…

A collective resource for rice sheath blight pathogen, Rhizoctonia solani AG1 IA genome and transcritome. RSIADB enables users to search, browse, and download gene sequences for R. solani AG1 IA, and…

AGD
Dataset

AGD Ashbya Genome Database

A comprehensive online source of information covering genes from the…

A comprehensive online source of information covering genes from the filamentous fungus Ashbya gossypii. The database content is based upon comparative genome annotation between A.gossypii and the…

Génolevures
Dataset

Génolevures

Provides annotated sequence data and classifications for the genomes of…

Provides annotated sequence data and classifications for the genomes of eighteen species of hemiascomycete yeasts, including nine complete genomes.

FGDB
Dataset

FGDB Fusarium graminearum Genome Database

A comprehensive genome database on one of the most devastating fungal plant…

A comprehensive genome database on one of the most devastating fungal plant pathogens of wheat, barley and maize.

AgBase
Dataset

AgBase

Provides resources to facilitate modeling of functional genomics data and…

Provides resources to facilitate modeling of functional genomics data and structural and functional annotation of agriculturally important animal, plant, microbe and parasite genomes.

CADRE
Dataset

CADRE Central Aspergillus Data REpository

Gathers genomic data from species of Aspergillus. CADRE aims to support the…

Gathers genomic data from species of Aspergillus. CADRE aims to support the international Aspergillus research community by gathering all genomic information for this genus into one public resource.…

CandidaDB
Dataset

CandidaDB

Contains a database dedicated to the analysis of the genome of the human fungal…

Contains a database dedicated to the analysis of the genome of the human fungal pathogen, Candida albicans.

PhytoPath
Dataset

PhytoPath

A resource for genomic and phenotypic data from plant pathogen species, that…

A resource for genomic and phenotypic data from plant pathogen species, that integrates phenotypic data for genes from PHI-base, an expertly curated catalog of genes with experimentally verified…

PomBase
Dataset

PomBase

It is the model organism database for the fission yeast Schizosaccharomyces…

It is the model organism database for the fission yeast Schizosaccharomyces pombe. PomBase provides a central hub for the fission yeast community, supporting both exploratory and hypothesis-driven…

CiF
Dataset

CiF Cyber infrastructure for Fusarium

Supports archiving and utilization of rapidly increasing data and knowledge and…

Supports archiving and utilization of rapidly increasing data and knowledge and consists of Fusarium-ID, Fusarium Comparative Genomics Platform (FCGP) and Fusarium Community Platform (FCP). The…

GPI
Dataset

GPI GenoPlante-Info

Aims at developing genome analysis programs for crop species (corn, wheat,…

Aims at developing genome analysis programs for crop species (corn, wheat, rapeseed, sunflower and pea) and model plants (Arabidopsis and rice).

Aspergillus…
Dataset

Aspergillus Genomes

A resource for viewing annotated genes arising from various Aspergillus…

A resource for viewing annotated genes arising from various Aspergillus sequencing and annotation projects.

MetaMicrobesOnl…
Dataset

MetaMicrobesOnline

Offers phylogenetic analysis of genes from microbial genomes and metagenomes.

Offers phylogenetic analysis of genes from microbial genomes and metagenomes.

YeastMine
Dataset

YeastMine

Allows users to query the different types of data present in the Saccharomyces…

Allows users to query the different types of data present in the Saccharomyces Genome Database (SGD) data. YeastMine is an integrated data warehouse with precomputed tables based on the InterMine…

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OmicsDI
Dataset

OmicsDI Omics Discovery Index

Permits to access, discover and disseminate omics data sets. OmicsDI is an…

Permits to access, discover and disseminate omics data sets. OmicsDI is an open-source platform that can integrate proteomics, genomics, metabolomics and transcriptomics data sets. This platform…

SilkPathDB
Dataset

SilkPathDB

Proposes a comprehensive resource for studying on pathogens of silkworm,…

Proposes a comprehensive resource for studying on pathogens of silkworm, including microsporidia, fungi, bacteria and virus. SilkPathDB provides access to not only genomic data including functional…

euGenes
Dataset

euGenes

A genome information system and database that provides a common summary of…

A genome information system and database that provides a common summary of eukaryote genes and genomes.

DemaDb
Dataset

DemaDb

Enables mycologists to access easily and analyse the genomics data using a…

Enables mycologists to access easily and analyse the genomics data using a genome browser. Currently, a total of eight genomes (B. papendorfii, D. eschscholtzii, P. unguis-hominis, C. sphaerospermum,…

Canto
Dataset

Canto

A web-based tool that provides an intuitive curation interface for both…

A web-based tool that provides an intuitive curation interface for both curators and researchers, to support community curation in the fission yeast database, PomBase.

PartiGeneDB
Dataset

PartiGeneDB

Provides a comprehensive resource facilitating comparative analyses.…

Provides a comprehensive resource facilitating comparative analyses. PartiGeneDB is a publicly available database resource allows researchers to access the partial genomes of organisms that may not…

SymbioGenomesDB
Dataset

SymbioGenomesDB

Consists of a community database resource for laboratories which aim to…

Consists of a community database resource for laboratories which aim to research and gather information of the genetics and the genomic systems involved in symbiosis, regardless of its biotic…

mycoCLAP
Dataset

mycoCLAP

A searchable database of fungal and bacterial genes encoding…

A searchable database of fungal and bacterial genes encoding lignocellulose-active proteins that have been biochemically characterized. All the biochemical properties and functional annotations…

Phanerochaete…
Dataset

Phanerochaete chrysosporium

A database offering the genome sequence of Phanerochaete chrysosporium, a crust…

A database offering the genome sequence of Phanerochaete chrysosporium, a crust fungi, which forms flat fused reproductive fruiting bodies instead of the mushroom structure. P. chrysoporium's…

AceDB
Dataset

AceDB A C. elegans DataBase

Provides a custom database kernel, with a non-standard data model designed…

Provides a custom database kernel, with a non-standard data model designed specifically for handling scientific data flexibly, and a graphical user interface with many specific displays and tools for…

eGOB
Web

eGOB eukaryotic Gene Order Browser

Views any eukaryotic gene and its genomic environment in different species.…

Views any eukaryotic gene and its genomic environment in different species. eGOB is an online tool that offers informations on the order of protein and non-coding RNA (ncRNA) genes of 74 different…

HelmCoP
Dataset

HelmCoP Helminth Control and Prevention

An online resource built by integrating functional, structural and comparative…

An online resource built by integrating functional, structural and comparative genomic data from plant, animal and human helminthes, to enable researchers to develop strategies for drug, vaccine and…

EFG
Dataset

EFG Electronic resource for Fusarium Graminearum

Assists users to better understand the Fusarium graminearum plant pathogen. EFG…

Assists users to better understand the Fusarium graminearum plant pathogen. EFG is a database that integrates different kinds of data, including genome information, proteome information and…

iGenomes
Dataset

iGenomes

Provides a set of reference sequences and annotation files for common…

Provides a set of reference sequences and annotation files for common organisms. iGenomes has been constructed with data from Ensembl, NCBI and UCSC. Chromosome names have been simplified to be…

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GnpIS
Dataset

GnpIS Genoplante Information System

A multispecies integrative information system dedicated to plant and fungi…

A multispecies integrative information system dedicated to plant and fungi pests. GnpIS bridges genetic and genomic data, allowing researchers access to both genetic information (e.g. genetic maps,…

Magnaporthe…
Dataset

Magnaporthe grisea Database

Performs a comprehensive molecular dissection of the mechanisms regulating…

Performs a comprehensive molecular dissection of the mechanisms regulating early events of the host-pathogen recognition process, including the induction of a specialized infection cell, the…

INSDC
Dataset
SGD
Dataset

SGD Saccharomyces Genome Database

Compiles comprehensive integrated biological information about the budding…

Compiles comprehensive integrated biological information about the budding yeast Saccharomyces cerevisiae. SGD is a manually-curated database which aims to improve the discovery of functional…

MNCDB
Dataset

MNCDB MIPS Neurospora crassa Genome Database

Aims to present information on the molecular structure and functional network…

Aims to present information on the molecular structure and functional network of the entirely sequenced, filamentous fungus Neurospora crassa.

CYGD
Dataset

CYGD Comprehensive Yeast Genome Database

Aims to present information on the molecular structure and functional network…

Aims to present information on the molecular structure and functional network of the entirely sequenced, well-studied model eukaryote, the budding yeast Saccharomyces cerevisiae.

FungiDB
Dataset

FungiDB

A functional genomic resource for pan-fungal genomes that was developed in…

A functional genomic resource for pan-fungal genomes that was developed in partnership with the Eukaryotic Pathogen Bioinformatic resource center.

MicrosporidiaDB
Dataset

MicrosporidiaDB

Functional genomic databases serving the microsporidia research communities.

Functional genomic databases serving the microsporidia research communities.

COGEME
Dataset

COGEME

Enables identification of a set of functional groups of genes that are more…

Enables identification of a set of functional groups of genes that are more highly represented in the genomes of pathogenic fungi than non-pathogenic species.

WikiGenomes
Dataset

WikiGenomes

Facilitates the consumption and curation of genomic data by the entire…

Facilitates the consumption and curation of genomic data by the entire scientific community. WikiGenomes empowers the individual genomic researcher to contribute their expertise to the curation…

ESTuber-db
Dataset

ESTuber-db

Consists of 2,389 sequences from an in-house prepared cDNA library from truffle…

Consists of 2,389 sequences from an in-house prepared cDNA library from truffle vegetative hyphae, and 882 sequences downloaded from GenBank. ESTuber-db is a resource of data and links related to…

CPGR
Dataset

CPGR Comprehensive Phytopathogen Genomics Resource

Provides information about plant pathogen genomics and their annotation. CPGR…

Provides information about plant pathogen genomics and their annotation. CPGR intends to help researchers for determining the genome sequence status of their organism of interest and for data mining…

RefGene
Dataset

RefGene

Contains information about human and non-human genes and antibodies. RefGene is…

Contains information about human and non-human genes and antibodies. RefGene is a database, implemented as a web user interface, which provides information on genes, such as a summary, orthologs and…

PRIME
Dataset

PRIME PRotein Interactions and Molecular Information databasE

An integrated gene/protein informatics database based on natural language…

An integrated gene/protein informatics database based on natural language processing. PRIME provides automatically extracted protein/family/gene/compound interaction information including both…

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