FungiFun pipeline

FungiFun specifications

Information


Unique identifier OMICS_05903
Name FungiFun
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.2.8
Stability Beta
Maintained Yes

Taxon


  • Fungi

Maintainer


  • person_outline Steffen Priebe <>

Publications for FungiFun

FungiFun citations

 (3)
2017
PMCID: 5559454

[…] were adjusted to determine differentially regulated genes100. venn diagrams were created by venny 2.0.2 (http://bioinfogp.cnb.csic.es/tools/venny/index.html)101. go analysis was carried out with fungifun2 (https://elbe.hki-jena.de/fungifun/fungifun.php)102. the whole dataset of detected protein-coding genes and their expression can be found in table s2., sequence information for all c. […]

2017
PMCID: 5381528

[…] editing sites found by liu et al. (2016) and with putative editing sites identified in sexual tissue from p. confluens. functional classification of genes with putative editing sites was done using fungifun 2 (priebe et al. 2015) with the funcat ontology (ruepp et al. 2004), or ontologizer (bauer et al. 2008) based on gene ontology (go) annotations from uniprot (ashburner et al. 2000, huntley […]

2013
PMCID: 3757043

[…] to define genes which are expressed higher or lower, respectively, in the mutant. functional characterization of these regulated genes was performed on the fungifun website (https://sbi.hki-jena.de/fungifun/fungifun.cgi) [55] based on both the funcat method and the gene ontology (go) classification [99]., infections of larvae from the greater waxmoth galleria mellonella were performed according […]

FungiFun institution(s)
Research Group Systems Biology/Bioinformatics, Leibniz Institute for Natural Product Research and Infection Biology – Hans-Knöll-Institute (HKI), Jena, Germany

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