Main logo
?
tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

funtooNorm

Online

An R package for normalization of data from the Illumina Infinium Human Methylation450 BeadChip (Illumina 450 K) built on the concepts in the recently published funNorm method, and introducing cell-type or tissue-type flexibility. funtooNorm is relevant for data sets containing samples from two or more cell or tissue types. A visual display of cross-validated errors informs the choice of the optimal number of components in the normalization. Improved normalization of datasets containing multiple tissues can be expected to translate into increased power to detect associations of interest, due to the inferred reduction in residual error; funNorm and this extension funtooNorm are designed with this goal in mind.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

0 user reviews

No review has been posted.

funtooNorm forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

funtooNorm classification

funtooNorm specifications

Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Biological technology:
Illumina
Programming languages:
R
Stability:
Stable

funtooNorm distribution

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

funtooNorm support

Documentation

Maintainer

  • Celia Greenwood <>

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Lady Davis Institute, Jewish General Hospital, Montreal, Canada; Ludmer Center for Neuroinformatics and Mental Health, McGill University Health Centre, McGill University, Montreal, Canada

Funding source(s)

This work was supported by the Ludmer Center for Neuroinformatics & Mental Health, and by the Canadian Institutes of Health Research operating grant MOP-300545.

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.