funtooNorm statistics

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funtooNorm specifications

Information


Unique identifier OMICS_10660
Name funtooNorm
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Celia Greenwood <>

Publication for funtooNorm

funtooNorm in publications

 (2)
PMCID: 5838860
PMID: 29527240
DOI: 10.1186/s13148-018-0464-5

[…] []; finally, 9925 sites on the x chromosome or the y chromosome. four hundred fourteen thousand five hundred ninety-two probes remained for analysis., filtered probes were normalized using the funtoonorm algorithm [], which extends the funnorm procedure [] and is purported to correct for unwanted variation while preserving important differences in methylation patterns between different […]

PMCID: 5837078
PMID: 29381404
DOI: 10.1080/15592294.2017.1411443

[…] one dutch sample was excluded from the analysis (sample_name: “10005833147_r05c02”) and two canadian samples were excluded (wg0014691_9407201099_r04c01 and wg0014729_9388306122_r02c01)., we used funtoonorm [] to normalize the methylation data and to remove technical biases due to batch, chip, and position while retaining inter-tissue differences. this is partially because our data sets […]


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funtooNorm institution(s)
Lady Davis Institute, Jewish General Hospital, Montreal, Canada; Ludmer Center for Neuroinformatics and Mental Health, McGill University Health Centre, McGill University, Montreal, Canada
funtooNorm funding source(s)
This work was supported by the Ludmer Center for Neuroinformatics & Mental Health, and by the Canadian Institutes of Health Research operating grant MOP-300545.

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