FUSIM specifications

Information


Unique identifier OMICS_01366
Name FUSIM
Alternative name FUsion SIMulator
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Number of fusion transcripts to generate, gene model, faidx-indexed reference genome, RNA-seq read alignments
Input format UCSC GenePred table, GFF, GTF, BAM
Output data Raw fusion sequences
Output format TXT, FASTA
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License Apache License version 2.0
Computer skills Advanced
Version 0.2.2
Stability Stable
Maintained Yes

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Publication for FUsion SIMulator

FUSIM institution(s)
Department of Biostatistics, SUNY at Buffalo, Buffalo, NY, USA; Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, NY, USA; Center for Computational Research, SUNY at Buffalo, Buffalo, NY, USA

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