FACTERA specifications

Unique identifier:
OMICS_05484
Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes
Name:
Fusion And Chromosomal Translocation Enumeration and Recovery Algorithm
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable

versioning

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No versioning.

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Credits

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Publications

Institution(s)

Institute for Stem Cell Biology and Regenerative Medicine, Division of Oncology, Department of Medicine, Department of Radiation Oncology and Stanford Cancer Institute, Stanford University, Stanford, CA, USA

User review

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2 user reviews

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2 user reviews

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Weijing Cai's avatar image

Weijing Cai

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Much much better that existing tools, especially for targeted capture data from cancer. Needs for improved a little for BWA-MEM, but still great.

Matt Shirley's avatar image

Matt Shirley

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very fast, intuitive, and precise tool. optimized for targeted capture data, but performance on RNA-Seq data reasonably good in my hands, though but not tested against other tools. addition of a paired mode (tumor/normal) option would be a nice feature.

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