FusionAnalyser statistics

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FusionAnalyser specifications

Information


Unique identifier OMICS_01347
Name FusionAnalyser
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data Sequence Alignment/Map
Input format SAM, BAM/BAI
Output data The fusion data generated through the dynamic filtering process are shown in real-time in a dedicated graphical visualization module.
Operating system Unix/Linux, Mac OS, Windows
Programming languages C#
License GNU General Public License version 3.0
Computer skills Medium
Version 2.0
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Piazza Rocco <>

Publication for FusionAnalyser

FusionAnalyser in publications

 (3)
PMCID: 5053695
PMID: 27058892
DOI: 10.18632/oncotarget.8556

[…] reported read-through events involved different exons and generated different read-through transcript isoforms. because of the stringent selection criteria used to select chimeric transcripts (using fusionanalyser software for rna-seq data mining) in our study, it is possible that additional read-through transcripts are present in normal lung tissue and deserve further investigation; indeed, […]

PMCID: 4748267
PMID: 26862001
DOI: 10.1038/srep21597

[…] nfuse scripts for fusion detection. the nfuse script of the package is used only for a combination of long reads and short reads. therefore, we used the defuse script of the nfuse software package. fusionanalyser and fusionmap are windows-based software packages, which run on the linux system, with the help of mono. we were unable to run fusionanalyser on our server because of compatibility […]

PMCID: 3599179
PMID: 23406336
DOI: 10.1186/1480-9222-15-4

[…] model that best explains all the reads obtained in the experiment. in addition, fusion transcripts can be detected using soapfusion, tophat-fusion [], breakfusion [], fusionhunter [], defuse [], fusionanalyser [], etc. to obtain a more complete view of cancer genome, an integrative approach to study diverse mutations, transcriptomes and epigenomes simultaneously on the pathways or networks […]


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FusionAnalyser institution(s)
Department of Clinical Medicine, University of Milano-Bicocca, Monza, Italy
FusionAnalyser funding source(s)
This work was supported by the Italian Ministry of Health [RFPS-2006-333974], the Italian Association for Cancer Research (AIRC) [IG-10092], the Progetti di Ricerca di Interesse Nazionale [20084XBENM_004], the CARIPLO Foundation [2009-2667], and the Regione Lombardia [ID-16871 and ID-14546A].

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