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FusionAnalyser | A graphical, event-driven tool for fusion rearrangements discovery

A package using paired reads and mapping to different genes (Bridge reads), to build a data set of candidate fusion events. FusionAnalyser is a graphical, eventdriven tool which makes use of paired-end short-read transcriptome sequences in human cancer to initially detect and annotate the presence of fusion rearrangements and then to identify the potentially driver events.

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FusionAnalyser classification

FusionAnalyser specifications

Unique identifier:
Graphical user interface
Input data:
Sequence Alignment/Map
Output data:
The fusion data generated through the dynamic filtering process are shown in real-time in a dedicated graphical visualization module.
Programming languages:
Computer skills:
Software type:
Restrictions to use:
Input format:
Operating system:
Unix/Linux, Mac OS, Windows
GNU General Public License version 3.0

FusionAnalyser distribution


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FusionAnalyser support



  • Piazza Rocco <>


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Department of Clinical Medicine, University of Milano-Bicocca, Monza, Italy

Funding source(s)

This work was supported by the Italian Ministry of Health [RFPS-2006-333974], the Italian Association for Cancer Research (AIRC) [IG-10092], the Progetti di Ricerca di Interesse Nazionale [20084XBENM_004], the CARIPLO Foundation [2009-2667], and the Regione Lombardia [ID-16871 and ID-14546A].

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