FusionAnalyser statistics
FusionAnalyser specifications
Information
Unique identifier | OMICS_01347 |
---|---|
Name | FusionAnalyser |
Software type | Package/Module |
Interface | Graphical user interface |
Restrictions to use | None |
Input data | Sequence Alignment/Map |
Input format | SAM, BAM/BAI |
Output data | The fusion data generated through the dynamic filtering process are shown in real-time in a dedicated graphical visualization module. |
Operating system | Unix/Linux, Mac OS, Windows |
Programming languages | C# |
License | GNU General Public License version 3.0 |
Computer skills | Medium |
Version | 2.0 |
Stability | Stable |
Maintained | Yes |
Versioning
Add your version
Documentation
- Documentation: http://www.ngsbicocca.org/html/faq_fa.html
Maintainer
- person_outline Piazza Rocco <>
Publication for FusionAnalyser
FusionAnalyser: a new graphical, event-driven tool for fusion rearrangements discovery.
FusionAnalyser in publications
(3)Read through transcripts in normal human lung parenchyma are down regulated in lung adenocarcinoma
[…] reported read-through events involved different exons and generated different read-through transcript isoforms. because of the stringent selection criteria used to select chimeric transcripts (using fusionanalyser software for rna-seq data mining) in our study, it is possible that additional read-through transcripts are present in normal lung tissue and deserve further investigation; indeed, […]
Comparative assessment of methods for the fusion transcripts detection from RNA Seq data
[…] nfuse scripts for fusion detection. the nfuse script of the package is used only for a combination of long reads and short reads. therefore, we used the defuse script of the nfuse software package. fusionanalyser and fusionmap are windows-based software packages, which run on the linux system, with the help of mono. we were unable to run fusionanalyser on our server because of compatibility […]
[…] model that best explains all the reads obtained in the experiment. in addition, fusion transcripts can be detected using soapfusion, tophat-fusion [], breakfusion [], fusionhunter [], defuse [], fusionanalyser [], etc. to obtain a more complete view of cancer genome, an integrative approach to study diverse mutations, transcriptomes and epigenomes simultaneously on the pathways or networks […]
FusionAnalyser reviews
Be the first to review FusionAnalyser