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Searches for novel/known somatic fusion genes, translocations, and chimeras in RNA-seq data (paired-end or single-end reads from Illumina NGS platforms like Solexa/HiSeq/NextSeq/MiSeq) from diseased samples. The aims of FusionCatcher are: 1) very good detection rate for finding candidate somatic fusion genes, 2) very good RT-PCR validation rate of found candidate somatic fusion genes and 3) to be as automatic as possible.

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FusionCatcher forum

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FusionCatcher classification

FusionCatcher specifications

Unique identifier:
OMICS_01348
Interface:
Command line interface
Biological technology:
Illumina
Programming languages:
Python
Computer skills:
Advanced
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable

FusionCatcher distribution

versioning

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No versioning.

FusionCatcher support

Documentation

Maintainer

  • Sara Kangaspeska <>

Credits

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Publications

Institution(s)

Institute for Molecular Medicine Finland (FIMM), Helsinki, Finland

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