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FusionDB specifications


Unique identifier OMICS_02889
Name FusionDB
Restrictions to use None
Maintained No


  • Primates
    • Homo sapiens

Publication for FusionDB

FusionDB citations


fusionDB: assessing microbial diversity and environmental preferences via functional similarity networks

Nucleic Acids Res
PMCID: 5753390
PMID: 29112720
DOI: 10.1093/nar/gkx1060

[…] iously developed fusion (), an organism functional similarity network, which can be used to broadly summarize the environmental factors driving microbial functional diversification. Here, we describe fusionDB – a database relating bacterial fusion functional repertoires to the corresponding environmental niches. fusionDB is explorable via a web-interface by querying for combinations of organism na […]


Structure of the bifunctional methyltransferase YcbY (RlmKL) that adds the m7G2069 and m2G2445 modifications in Escherichia coli 23S rRNA

Nucleic Acids Res
PMCID: 3367195
PMID: 22362734
DOI: 10.1093/nar/gks160
call_split See protocol

[…] ), structural comparisons were carried out using DALI, and conserved domains were found in the COG database (). The likelihood of gene fusion having occurred was tested in the fusion protein database FusionDB (). Alignment graphics were generated using ESPript (). […]


SAFE Software and FED Database to Uncover Protein Protein Interactions using Gene Fusion Analysis

Evol Bioinform Online
PMCID: 3256994
PMID: 22267904
DOI: 10.4137/EBO.S8018

[…] INKS database provides information based on the phylogenetic profiles method, the gene neighbors method, the gene cluster method and the Rosetta Stone method. The latter one led to the development of FusionDB, a specialized database containing fusion events detected in genomes of the archaea and bacteria. Given the wide interest in that particular research field, FED extends and makes available in […]


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FusionDB institution(s)
Information Génomique and Structurale, CNRS-UPR 2589, Marseille, France

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