FusionMap pipeline

FusionMap specifications


Unique identifier OMICS_00316
Name FusionMap
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Windows
Programming languages C#
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for FusionMap

FusionMap citation

PMCID: 5362463

[…] fastq files from rna sequencing of the patient samples were mapped to human genome reference (hg19) according to the bowtie method [21]. tophat was used to generate read counts per gene [22] and fusionmap was used to discover fusion candidates. an in-house method was developed for inferring the actual read counts supporting the fusion junction and the wild-type sequences of the respective […]

FusionMap institution(s)
Research and Development Informatics, Amgen Inc; One Amgen Center Drive, Thousand Oaks, CA, USA

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