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  3. Genome annotation
  4. Repetitive DNA
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An efficient fusion aligner which aligns reads spanning fusion junctions directly to the genome without prior knowledge of potential fusion regions.

Software type:
Command line interface
Restrictions to use:
Academic users only
Operating system:
Unix/Linux, Windows
Programming languages:
Computer skills:
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  • (Ge et al., 2011) FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution. Bioinformatics.
    PMID: 21593131
  • (Lin et al., 2014) Making the difference: integrating structural variation detection tools. Briefings in bioinformatics.
    PMID: 25504367

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