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Gene fusion detection
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FusionMetaCaller specifications
Information
| Unique identifier | OMICS_12009 |
|---|---|
| Name | FusionMetaCaller |
| Software type | Toolkit/Suite |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux, Mac OS, Windows |
| Programming languages | R |
| License | GNU General Public License version 2.0 |
| Computer skills | Advanced |
| Version | 1.0 |
| Stability | Stable |
| Maintained | Yes |
Versioning
No version available
Documentation
Maintainer
- person_outline Silvia Liu
Publication for FusionMetaCaller
2016 Nucleic Acids Res
PMCID: 4797269
PMID: 26582927
DOI: 10.1093/nar/gkv1234
FusionMetaCaller citation
library_books
Discovering and understanding oncogenic gene fusions through data intensive computational approaches
2016
Nucleic Acids Res
PMCID: 4889949
PMID: 27105842
DOI: 10.1093/nar/gkw282
[…] re packages, such as BreakDancer () and CREST (), can call gene fusions in addition to other structural rearrangements. In the last 2 years, several additional fusion mapping tools have been released—FusionMetaCaller (), JAFFA (), IDP-fusion (), TRUP (), FusionCatcher and PRADA (). A number of supporting tools, such as the Bioconductor package Chimera (), offer utilities for organizing, analyzing […]
FusionMetaCaller institution(s)
Department of Biostatistics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA, USA; Department of Computational and Systems Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA; Institute of Biomedical Informatics, National Yang-Ming University, Taipei, Taiwan; Institute of Microbiology and Immunology, National Yang-Ming University, Taipei, Taiwan; Molecular Pharmacology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA; Magee-Women's Research Institute, Pittsburgh, PA, USA; Department of Pathology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA; Center for Systems and Synthetic Biology, National Yang-Ming University, Taipei, Taiwan
FusionMetaCaller funding source(s)
NIH [R21MH094862 and RO1CA190766]; University of Pittsburgh Cancer Institute; Ministry of Science and Technology (MOST) [MOST103-2221-E-010-015 and MOST 104-2221-E-010-012]; National Yang-Ming University, Taiwan (a grant from Ministry of Education, Aim for the Top University Plan)
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