FusionMetaCaller statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

FusionMetaCaller specifications

Information


Unique identifier OMICS_12009
Name FusionMetaCaller
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Silvia Liu <>

Publication for FusionMetaCaller

FusionMetaCaller in publication

PMCID: 4889949
PMID: 27105842
DOI: 10.1093/nar/gkw282

[…] packages, such as breakdancer () and crest (), can call gene fusions in addition to other structural rearrangements. in the last 2 years, several additional fusion mapping tools have been released—fusionmetacaller (), jaffa (), idp-fusion (), trup (), fusioncatcher and prada (). a number of supporting tools, such as the bioconductor package chimera (), offer utilities for organizing, analyzing […]


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FusionMetaCaller institution(s)
Department of Biostatistics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA, USA; Department of Computational and Systems Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA; Institute of Biomedical Informatics, National Yang-Ming University, Taipei, Taiwan; Institute of Microbiology and Immunology, National Yang-Ming University, Taipei, Taiwan; Molecular Pharmacology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA; Magee-Women's Research Institute, Pittsburgh, PA, USA; Department of Pathology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA; Center for Systems and Synthetic Biology, National Yang-Ming University, Taipei, Taiwan
FusionMetaCaller funding source(s)
NIH [R21MH094862 and RO1CA190766]; University of Pittsburgh Cancer Institute; Ministry of Science and Technology (MOST) [MOST103-2221-E-010-015 and MOST 104-2221-E-010-012]; National Yang-Ming University, Taiwan (a grant from Ministry of Education, Aim for the Top University Plan)

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