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fuzztran

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Searches for patterns in nucleic acid sequences that are first translated to protein in the specified frame with a specified genetic code. fuzztran uses patterns based on the format of pattern used in the PROSITE database, with the difference that the terminating dot '.' and the hyphens, '-', between the characters are optional. Patterns can specify a search for an exact sequence or they can allow various ambiguities, matches to variable lengths of sequence and repeated subsections of the sequence.

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fuzztran classification

fuzztran specifications

Software type:
Package/Module
Restrictions to use:
None
Output data:
A sequence feature (motifs).
Programming languages:
C
Computer skills:
Advanced
Source code URL:
ftp://emboss.open-bio.org/pub/EMBOSS/emboss-latest.tar.gz
Interface:
Command line interface
Input data:
A sequence record (nucleic acid).
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Stability:
Stable
Maintained:
Yes

fuzztran support

Maintainer

  • Alan Bleasby <>

Credits

Institution(s)

European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

Link to literature

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