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Fuzzy Inference of Gene-sets FIGS

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Identifies multi-functional genes from meta-analysis of context-specific transcriptomic datasets. FIGS is an application that can be used to obtain gene-sets from matrix defining the pair-wise distance between the genes. It also provides an option to upload pathways for enrichment analysis of gene-sets. This package requires three parameters: number of clusters, fuzziness allowed between the clusters, and cluster association criteria to produce fuzzy gene-sets.

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FIGS classification

FIGS specifications

Software type:
Application/Script
Restrictions to use:
None
Programming languages:
MATLAB
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
License:
MIT License
Stability:
Stable

FIGS distribution

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No versioning.

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FIGS support

Maintainer

  • Juilee Thakar <>

Credits

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Publications

Institution(s)

Department of Microbiology and Immunology, University of Rochester, Rochester, NY, USA; Department of Biostatistics and Computational Biology, University of Rochester, Rochester, NY, USA; Strong Memorial Hospital, Rochester, NY, USA

Funding source(s)

Supported in part by Respiratory Pathogens Research Center (NIAID contract number HSN272201200005C), the University of Rochester Center for AIDS Research (NIH 5 P30 AI078498-08).

Link to literature

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