G-compass specifications

Information


Unique identifier OMICS_00934
Name G-compass
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for G-compass

G-compass in publications

 (2)
PMCID: 3752010
PMID: 22975719
DOI: 10.1093/gbe/evs075

[…] alignments among the four species were constructed based on two procedures as described later. orthologous pairwise alignments between the human and each great ape sequences were generated with the g-compass pipeline (; ) based on lastz local alignments () and its unique and nonredundant reciprocal best hits. subsequently, the human genomic regions that possessed the orthologous pairwise […]

PMCID: 3227671
PMID: 22011259
DOI: 10.1186/1471-2148-11-308

[…] inversions within the alignments between the human and chimpanzee genomes. we first generated 2.41 gb of one-to-one (i.e., orthologous) alignments between the human and chimpanzee genomes using the g-compass pipeline [,], and identified inversions in each local alignment. subsequently, we examined the relationships of ultramicro inversions with the structural features of the human genome […]


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G-compass institution(s)
Japan Biological Information Research Center, Japan Biological Informatics Consortium, Aomi, Koto-ku, Tokyo, Japan

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