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G-quadruplex detection software tools | RNA structure data analysis

QuadBase
Web

QuadBase

Allows multiplexed putative G4 (PG4) motif mining in large number of nucleotide…

Allows multiplexed putative G4 (PG4) motif mining in large number of nucleotide sequences and also enables profiling complete prokaryotic genomes. QuadBase is linked with Ensembl's genomic…

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QGRS-H…
Web

QGRS-H Predictor

It can map and analyze conserved putative Quadruplex forming 'G'-Rich…

It can map and analyze conserved putative Quadruplex forming 'G'-Rich Sequences (QGRS) in mRNAs, ncRNAs and other nucleotide sequences, e.g. promoter, telomeric and gene flanking regions.

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pqsfinder
Desktop

pqsfinder

Permits exhaustive and imperfection-tolerant search for potential…

Permits exhaustive and imperfection-tolerant search for potential quadruplex-forming sequences. The pqsfinder algorithm can be divided into three logical steps: (i) identification of all possible G…

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G4RNA screener
Desktop

G4RNA screener

Provides a way to identify potential RNA G4. G4RNA screener includes several…

Provides a way to identify potential RNA G4. G4RNA screener includes several tools as G4NN, which is a novel machine learning approach trained on sequences. Its abstract representation of the…

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QGRS Mapper
Web
Desktop

QGRS Mapper

Predicts quadruplex forming G-rich sequences (QGRS) in nucleotide sequences.…

Predicts quadruplex forming G-rich sequences (QGRS) in nucleotide sequences. QGRS Mapper is a user-friendly application that provides many options for defining and studying G-quadruplexes. It…

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Quadfinder
Web

Quadfinder

An online server for prediction and bioinformatics of uni-molecular…

An online server for prediction and bioinformatics of uni-molecular quadruplex-forming nucleotide sequences. Quadfinder enables users to discover G-quadruplex motifs in any sequence of interest. The…

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QuadPredict
Web

QuadPredict

Predicts thermal stability and acts as a repository for experimental data from…

Predicts thermal stability and acts as a repository for experimental data from all researchers. QuadPredict is capable of making accurate predictions of thermal stability for new sequences, having…

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