G4ALL pipeline

G4ALL specifications

Information


Unique identifier OMICS_12017
Name G4ALL
Alternative name Graphical contig analyzer for all sequencing platforms
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Database management system MySQL
Computer skills Medium
Stability No
Requirements JDK, MySql server database
Maintained No

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Publication for Graphical contig analyzer for all sequencing platforms

G4ALL IN pipelines

 (2)
2013
PMCID: 3662823
PMID: 23704183
DOI: 10.1128/genomeA.00264-13

[…] reads and 80,374,097 detected bases, whereas semiconductor sequencing revealed 484,970 reads and 56,643,033 bases. the reads were assembled with the gs de novo assembler (version 2.6) and the g4all software package (version 1.0.5) (http://g4all.sourceforge.net/) to yield 74 contigs sequenced with 59-fold coverage. the remaining gaps in the genome sequence were closed by pcr amplification […]

2013
PMCID: 3662823
PMID: 23704183
DOI: 10.1128/genomeA.00264-13

[…] semiconductor sequencing revealed 484,970 reads and 56,643,033 bases. the reads were assembled with the gs de novo assembler (version 2.6) and the g4all software package (version 1.0.5) (http://g4all.sourceforge.net/) to yield 74 contigs sequenced with 59-fold coverage. the remaining gaps in the genome sequence were closed by pcr amplification and subsequent sequencing of the dna fragments […]

G4ALL institution(s)
Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, PA, Brazil; Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil; Centre for Genomics and Applied Gene Technology, Institute of Integrative Omics and Applied Biotechnology (IIOAB), Nonakuri, Purba Medinipur, West Bengal, India
G4ALL funding source(s)
The Rede Paraense de Genômica e Proteômica supported by Fundação de Amparo a Pesquisa do Estado do Pará; Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq); the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

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