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GAA specifications


Unique identifier OMICS_09319
Name GAA
Alternative name Graph Accordance Assembly
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for Graph Accordance Assembly

GAA in publications

PMCID: 5819677
PMID: 29463212
DOI: 10.1186/s12864-018-4539-7

[…] these contigs 650 mbp was assembled. jr-assembler assembled 370,267 contigs (> 500 bp) with an n50 of 1.3 kbp and a total assembled length of 433 mbp. after merging the two assembles with a graph accordance assembly program [], the a. limnaeus draft genome assembly v1.0 has 168,369 contigs, has a contig n50 of 8.1 kb, and is 695 mbp in total length. use of mate-pair libraries […]

PMCID: 5596377
PMID: 28898352
DOI: 10.1590/1678-4685-GMB-2016-0230

[…] genome as a template. maia was implemented on top of the matlab programming language and is available as a package for it that can be obtained from the url, gaa (graph accordance assembly) (): is an assembly integration software that is based on a homonymous data structure. taking a set of contigs as input, the tool uses blat () to generate alignments, […]


IMA Genome F 6

PMCID: 4941685
PMID: 27433447
DOI: 10.5598/imafungus.2016.07.01.11

[…] single-copy orthologs with busco (). based on these metrics, the best assemblies from the corrected pacbio and illumina read datasets were chosen to create an improved hybrid assembly using graph accordance assembly program (gaa) (). scaffolds were generated with sspace (). gene predication utilized repeatmasker v. 0.10.1 (described in ) to remove repeat and low complexity dna regions […]

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GAA institution(s)
The Genome Institute, Washington University School of Medicine, St Louis, MO, USA
GAA funding source(s)
National Human Genome Research Institute (grant HG004968)

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