GAAP specifications

Information


Unique identifier OMICS_14137
Name GAAP
Alternative name Genome-organization-framework Assisted Assembly Pipeline
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Paired-end reads, contigs or scaffolds assembled by de novo DNA-Seq assembler, gene cluster files generated from genomes of a closely related species
Input format FASTA, FASTQ
Output data The cGOF genes of segments, the order and orientation of cGOF segments in reference genomes
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Zhang Zhang <>

Publication for Genome-organization-framework Assisted Assembly Pipeline

GAAP institution(s)
BIG Data Center, Beijing Institute of Genomics (BIG), Chinese Academy of Sciences, Beijing, China; CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China; University of Chinese Academy of Sciences, Beijing, China
GAAP funding source(s)
Strategic Priority Research Program of the Chinese Academy of Sciences [XDB13040500, XDA08020102]; National Key Research Program of China [2016YFC0901603, 2016YFB0201702, 2016YFC0901903]; National Programs for High Technology Research and Development [2015AA020108]; National Natural Science Foundation of China [31100915, 31200978, 31271386, 31471248]; International Partnership Program of the Chinese Academy of Sciences [153F11KYSB20160008]; Key Program of the Chinese Academy of Sciences [KJZD-EW-L14]; Key Technology Talent Program of the Chinese Academy of Sciences; The 100 Talent Program of the Chinese Academy of Sciences

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