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Gabedit specifications

Information


Unique identifier OMICS_13869
Name Gabedit
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C
License BSD 3-clause “New” or “Revised” License
Computer skills Medium
Stability Stable
Requirements
OpenGL (or Mesa3D), gtk+
Maintained Yes

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Publication for Gabedit

Gabedit citations

 (3)
call_split

Systematic and efficient navigating potential energy surface: Data for silver doped gold clusters

2016
PMCID: 4842848
PMID: 27158643
DOI: 10.1016/j.dib.2016.04.014
call_split See protocol

[…] ion of PM7 in MOPAC2012 (openMOPAC.net), as provided by Dr. J.J.P. Stewart, was used. All structures and optimization pathways were visualized in VMD, version 1.9.1 Input structures were prepared in Gabedit . […]

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Elucidation of the Binding Mechanism of Coumarin Derivatives with Human Serum Albumin

2013
PLoS One
PMCID: 3665821
PMID: 23724004
DOI: 10.1371/journal.pone.0063805

[…] PDB ID: 1AO6) was obtained from the Brookhaven Protein Data Bank . From the 2D structure, the three-dimensional structure of coumarin derivatives was built, and the geometry was optimized through the Gabedit 2.2.12 software . In AutoDock, water molecules and ions were removed (including ordered water molecules) and hydrogen atoms added at appropriate geometry groups within the protein, were ionize […]

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Quantum mechanical studies of lincosamides

2011
J Mol Model
PMCID: 3360846
PMID: 22116607
DOI: 10.1007/s00894-011-1272-4

[…] g the GAUSSIAN03 and GAUSSIAN09 software packages []. The NBO calculations were performed with the NBO 5.0 program [], while AIM calculations were performed using AIM2000 []. Data were analyzed using Gabedit [], and the visualizations were carried out with VMD [] and XDrawChem. […]


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Gabedit institution(s)
Université de Lyon, Lyon, France; Université Lyon 1, Villeurbanne, France; CNRS, UMR 5579, LASIM, France

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