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GabiPD specifications


Unique identifier OMICS_03230
Name GabiPD
Alternative name GABI Primary Database
Restrictions to use None
Maintained Yes


  • person_outline GabiPD

Publication for GABI Primary Database

GabiPD citations


Comparative analysis of the root transcriptomes of cultivated and wild rice varieties in response to Magnaporthe oryzae infection revealed both common and species specific pathogen responses

PMCID: 5910329
PMID: 29679239
DOI: 10.1186/s12284-018-0211-8
call_split See protocol

[…] with the limma package. Principal component analysis (PCA) was conducted using the PCA function in R 3.2.1 with the FactoMineR package. MapMan analysis was conducted using MapMan 3.6.0 ( software. […]


Transcriptomic profiling of tall fescue in response to heat stress and improved thermotolerance by melatonin and 24 epibrassinolide

BMC Genomics
PMCID: 5870388
PMID: 29587632
DOI: 10.1186/s12864-018-4588-y
call_split See protocol

[…] he Classification SuperViewer Tool ( []. The annotated TAIR IDs of each tall fescue gene were loaded. MapMan ( [] and and GO ( were used as classification sources for pathway and GO term enrichment analyses, respectively. The normali […]


Transcriptomic analysis of transgressive segregants revealed the central role of photosynthetic capacity and efficiency in biomass accumulation in sugarcane

Sci Rep
PMCID: 5849761
PMID: 29535363
DOI: 10.1038/s41598-018-22798-5

[…] ld change and FDR corrected p-value < 0.05 were considered to be significantly differentially expressed. Significantly expressed genes were mapped onto bins using the Mercator web tool ( and visualized using MapMan. […]


Comparative Transcriptome Profiles of Near Isogenic Hexaploid Wheat Lines Differing for Effective Alleles at the 2DL FHB Resistance QTL

Front Plant Sci
PMCID: 5797473
PMID: 29434615
DOI: 10.3389/fpls.2018.00037
call_split See protocol

[…] l., )] was performed by importing DESEq2-mormalized data into mapman application.Wheat genes were assigned to mapman bins based on the available wheat mappings file: IWGSP_MIPSv2.2.txt ( upon parsing and adapting ID suffixes in mapman mapping file.For gene onthology (GO) enrichments, the GOSeq bioconductor package (Robinson and Oshlack, ) was used as […]


Transcriptomic Response of Resistant (PI613981–Malus sieversii) and Susceptible (“Royal Gala”) Genotypes of Apple to Blue Mold (Penicillium expansum) Infection

Front Plant Sci
PMCID: 5696741
PMID: 29201037
DOI: 10.3389/fpls.2017.01981
call_split See protocol

[…] an et al., ). DEGs were classified into MapMan BINs using the Malus × domestica genome, available in Phytozome v9.0, and their annotated functions were visualized using the MapMan tool ( (Thimm et al., ). […]


The karrikin receptor KAI2 promotes drought resistance in Arabidopsis thaliana

PLoS Genet
PMCID: 5703579
PMID: 29131815
DOI: 10.1371/journal.pgen.1007076
call_split See protocol

[…] lue) <0.05 were used in identifying the DEGs []. The raw microarray data and detailed protocol were deposited in the Gene Expression Omnibus database (GSE90622). When necessary, MapMan (, or Arabidopsis eFP browser ( were used to analyze the data. […]

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GabiPD institution(s)
GabiPD team, Bioinformatics group, Max Planck Institute of Molecular Plant Physiology, Berlin, Germany

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