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Gaggle | An open-source software system for integrating bioinformatics software and data sources


Allows to integrate and visualize high throughput data in context of the genome. Gaggle is an interactive graphical tool which enables plotting of multiple tracks of data of diverse types along the genome at multiple scales with dynamic panning and zooming. The software can function as part of a powerful suite of bioinformatics tools able to exchange data with analysis software, other visualizations, and several public data sources.

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Gaggle forum

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Gaggle classification

Gaggle specifications

Unique identifier:
Software type:
Restrictions to use:
Programming languages:
Alternative name:
Gaggle Genome Browser
Graphical user interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:

Gaggle distribution


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Gaggle support


  • Nitin Baliga <>


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Institute for Systems Biology, Seattle, WA, USA; Universidade de São Paulo, Ribeirão Preto, Ribeirão Preto, SP, Brazil

Funding source(s)

Supported by grants from NSF (DBI-0640950), NIH (1R01GM077398 and P50GM076547), DOE (MAGGIE: DE-FG02-07ER64327) and Battelle (214610).

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