Galaxy LIMS statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Galaxy LIMS
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Tool usage distribution map

This map represents all the scientific publications referring to Galaxy LIMS per scientific context
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Galaxy LIMS specifications

Information


Unique identifier OMICS_01004
Name Galaxy LIMS
Software type Toolkit/Suite
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


No version available

Publication for Galaxy LIMS

Galaxy LIMS citations

 (7)
library_books

New challenges for BRCA testing: a view from the diagnostic laboratory

2016
Eur J Hum Genet
PMCID: 5141576
PMID: 27514839
DOI: 10.1038/ejhg.2016.94

[…] . Commercial systems tend to involve high setup costs and can require extensive configuration and customisation to address specific laboratory needs. Open-source solutions are also available, such as Galaxy LIMS (Tron, Mainz, Germany). […]

library_books

Integrated Systems for NGS Data Management and Analysis: Open Issues and Available Solutions

2016
Front Genet
PMCID: 4858535
PMID: 27200084
DOI: 10.3389/fgene.2016.00075

[…] eq, RNA-Seq, miRNA-Seq, and Exome-Seq. SLIMS is a sample management tool that allows the creation of metadata information for genome-wide association studies (). The Galaxy platform offers the module Galaxy LIMS () providing full access to Galaxy analysis tools in addition to basic LIMS functions. […]

library_books

SaDA: From Sampling to Data Analysis—An Extensible Open Source Infrastructure for Rapid, Robust and Automated Management and Analysis of Modern Ecological High Throughput Microarray Data

2015
PMCID: 4483705
PMID: 26047146
DOI: 10.3390/ijerph120606352

[…] rovide embedded pipelines for the analysis of ChIP-Seq, RNA-Seq, miRNA-Seq and Exome-Seq experiments.There is also an extension with LIMS functionality to the popular Galaxy [] workflow engine called Galaxy LIMS []. The system supports request submission, offers assistance during flow cell layout, and automatically launches Illumina’s CASAVA software [] to perform de-multiplexing and delivery of t […]

library_books

Onco STS: a web based laboratory information management system for sample and analysis tracking in oncogenomic experiments

2014
Source Code Biol Med
PMCID: 4288629
PMID: 25580158
DOI: 10.1186/s13029-014-0025-z

[…] earch and management of the data tedious.A number of Laboratory Information Management Systems (LIMS) for next generation sequencing experiments are freely available, including GNomEx [], openBIS [], Galaxy LIMS [] and SeqBench []. However, none of these systems is designed specifically for oncogenomic experiments in which both array based and different sequencing technologies are used to analyse […]

library_books

Sequencing and comparative genomic analysis of 1227 Felis catus cDNA sequences enriched for developmental, clinical and nutritional phenotypes

2012
BMC Genomics
PMCID: 3278379
PMID: 22257742
DOI: 10.1186/1471-2164-13-31

[…] llary electrophoresis using the ABI3730 Genetic Analyzer (Applied Biosystems, CA). Sequencing reads were processed using Phred and quality scores for each run were monitored using the Agencourt, Inc. Galaxy LIMS system. Sequencing of these cDNA libraries yielded a total of 919,676 EST reads. […]

library_books

The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences

2010
BMC Genomics
PMCID: 2996948
PMID: 20609256
DOI: 10.1186/1471-2164-11-420

[…] All reads were processed using PHRED base calling software and constantly monitored against quality metrics using the PHRED Q20 [,]. The quality scores for each run were monitored through Agencourt's Galaxy LIMS system. A passing read was defined as an average high quality PHRED score of 20 or higher for at least 100 bases. Typical average read-lengths extended 500-600 bp. The Arachne Whole Genome […]


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Galaxy LIMS institution(s)
Computational Medicine, TRON - Translational Oncology at the Johannes Gutenberg University of Mainz Medicine, Mainz, Germany

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