Galaxy LIMS statistics

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Tool usage distribution map

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Associated diseases

Associated diseases

Galaxy LIMS specifications

Information


Unique identifier OMICS_01004
Name Galaxy LIMS
Software type Toolkit/Suite
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes

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Publication for Galaxy LIMS

Galaxy LIMS in publications

 (3)
PMCID: 3278379
PMID: 22257742
DOI: 10.1186/1471-2164-13-31

[…] electrophoresis using the abi3730 genetic analyzer (applied biosystems, ca). sequencing reads were processed using phred and quality scores for each run were monitored using the agencourt, inc. galaxy lims system. sequencing of these cdna libraries yielded a total of 919,676 est reads., the sequence data, annotation data and the data resulting from sequence analysis were loaded […]

PMCID: 2996948
PMID: 20609256
DOI: 10.1186/1471-2164-11-420

[…] reads were processed using phred base calling software and constantly monitored against quality metrics using the phred q20 [,]. the quality scores for each run were monitored through agencourt's galaxy lims system. a passing read was defined as an average high quality phred score of 20 or higher for at least 100 bases. typical average read-lengths extended 500-600 bp. the arachne whole […]

PMCID: 2147049
PMID: 18159241
DOI: 10.1371/journal.pone.0001358

[…] reads were processed using phred base calling software , and monitored constantly against quality metrics using the phred q20. the quality scores for each run were monitored through a proprietary galaxy lims system (agencourt). any substantial deviation from the normal range was investigated immediately., shotgun reads were assembled using the paracel genomeassembler (paracel, pasadena, ca) […]


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Galaxy LIMS institution(s)
Computational Medicine, TRON - Translational Oncology at the Johannes Gutenberg University of Mainz Medicine, Mainz, Germany

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