Galaxy-M specifications


Unique identifier OMICS_30465
Name Galaxy-M
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages MATLAB, Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
ggplot2, CAMERA, xcms, python, msfilereader, mi-pack
Maintained Yes




No version available


  • person_outline Mark R. Viant

Publication for Galaxy-M

Galaxy-M citations


Navigating freely available software tools for metabolomics analysis

PMCID: 5550549
PMID: 28890673
DOI: 10.1007/s11306-017-1242-7

[…] orkflows. Although it was originally created for genomics analysis, it is being increasingly used as a general bioinformatics workflow management system. Workflow4metabolomics (Giacomoni et al. ) and Galaxy-M (Davidson et al. ) are Galaxy-based workflows for the analysis of metabolomics data. Workflow4metabolomics (Giacomoni et al. ) encompasses analysis workflows for LC–MS, GC–MS and NMR data, al […]


Non targeted UHPLC MS metabolomic data processing methods: a comparative investigation of normalisation, missing value imputation, transformation and scaling

PMCID: 4831991
PMID: 27123000
DOI: 10.1007/s11306-016-1030-9

[…] mber of factors including the structure of the data acquired and the subsequent data analysis techniques applied. A range of tools [e.g. MetaboAnalyst (], workflows [e.g. Galaxy-M (; Davidson et al. ) and Workflow4Metabolomics (Giacomoni et al. )] and R packages [e.g. mixOmics;] are available to per […]

Galaxy-M institution(s)
GigaScience, BGI-Hong Kong Co. Ltd, Tai Po Industrial Estate, Tai Po, Hong Kong, China; School of Biosciences, University of Birmingham, Birmingham, UK
Galaxy-M funding source(s)
Supported by grants from the UK Biotechnology and Biological Sciences Research Council (BB/M019985/1), UK Natural Environmental Research Council (NERC; NE/K011294/1), and NERC Biomolecular Analysis Facility at the University of Birmingham (R8- H10-61).

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