GalaxyTBM statistics

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Associated diseases

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GalaxyTBM specifications

Information


Unique identifier OMICS_08421
Name GalaxyTBM
Interface Web user interface
Restrictions to use None
Input data A SEQ file in the FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Chaok Seok <>

Publication for GalaxyTBM

GalaxyTBM in publications

 (3)
PMCID: 4353713
PMID: 25750990
DOI: 10.1371/journal.pone.0119329

[…] using clustal w [] was done to identify the altered residues., three-dimensional protein model of pgb01-dfra7 (ac.no. cbh31027) was generated by using homology modeling approach. model was made via galaxytbm []. five templates (pdb id: 3tq8, 1zdr, 3dau, 3ia4 and 3ix9) with sequence identity of 6–29% to the target were selected by the galaxytbm pipeline and additionally structure was refined […]

PMCID: 3805589
PMID: 24167608
DOI: 10.1371/journal.pone.0078189

[…] a. phagocytophilum hz strain, aph-webster: a. phagocytophilum webster strain, lz-hga-agent: chinese a. phagocytophilum isolate., protein tertiary structure prediction was performed using the program galaxytbm (http://galaxy.seoklab.org/), and the predicted results are shown in . the predicted results indicated that the msp2 protein tertiary structures of the lz-hga-agent isolate, the aph-hz […]

PMCID: 3394311
PMID: 22649060
DOI: 10.1093/nar/gks493

[…] here would be invaluable for further functional or design studies because they often contribute to the specific functions of related proteins ()., a flowchart of the galaxyweb structure prediction (galaxytbm) and refinement (galaxyrefine) procedure is shown in . first, candidates for templates are selected by rescoring hhsearch () results placing more weights on the secondary structure score […]


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GalaxyTBM institution(s)
Department of Chemistry, Seoul National University, Seoul, Korea
GalaxyTBM funding source(s)
This work was supported by the KOSEF/MEST Grant No. 2011–0012456 and the Center for Marine Natural Products and Drug Discovery (CMDD), one of the MarineBio21 programs funded by the Ministry of Land, Transport, and Maritime Affairs.

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