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GalaxyTBM specifications


Unique identifier OMICS_08421
Name GalaxyTBM
Interface Web user interface
Restrictions to use None
Input data A SEQ file in the FASTA
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Chaok Seok

Publication for GalaxyTBM

GalaxyTBM citations


An Escherichia coli Strain, PGB01, Isolated from Feral Pigeon Faeces, Thermally Fit to Survive in Pigeon, Shows High Level Resistance to Trimethoprim

PLoS One
PMCID: 4353713
PMID: 25750990
DOI: 10.1371/journal.pone.0119329

[…] 76) using CLUSTAL W [] was done to identify the altered residues.Three-dimensional protein model of PGB01-DfrA7 (Ac.No. CBH31027) was generated by using homology modeling approach. Model was made via GalaxyTBM []. Five templates (PDB ID: 3TQ8, 1ZDR, 3DAU, 3IA4 and 3IX9) with sequence identity of 6–29% to the target were selected by the GalaxyTBM pipeline and additionally structure was refined by u […]


Molecular Characterization of msp2/p44 of Anaplasma phagocytophilum Isolated from Infected Patients and Haemaphysalis longicornis in Laizhou Bay, Shandong Province, China

PLoS One
PMCID: 3805589
PMID: 24167608
DOI: 10.1371/journal.pone.0078189

[…] Protein tertiary structure prediction was performed using the program GalaxyTBM (, and the predicted results are shown in . The predicted results indicated that the MSP2 protein tertiary structures of the LZ-HGA-Agent isolate, the APH-HZ and t […]


GalaxyWEB server for protein structure prediction and refinement

Nucleic Acids Res
PMCID: 3394311
PMID: 22649060
DOI: 10.1093/nar/gks493
call_split See protocol

[…] A flowchart of the GalaxyWEB structure prediction (GalaxyTBM) and refinement (GalaxyREFINE) procedure is shown in . First, candidates for templates are selected by rescoring HHsearch () results placing more weights on the secondary structure score for […]


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GalaxyTBM institution(s)
Department of Chemistry, Seoul National University, Seoul, Korea
GalaxyTBM funding source(s)
This work was supported by the KOSEF/MEST Grant No. 2011–0012456 and the Center for Marine Natural Products and Drug Discovery (CMDD), one of the MarineBio21 programs funded by the Ministry of Land, Transport, and Maritime Affairs.

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