GAP protocols

GAP specifications

Information


Unique identifier OMICS_02119
Name GAP
Alternative name Genome Alteration Print
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for Genome Alteration Print

GAP IN pipeline

2017
PMCID: 5376755
PMID: 28275007
DOI: 10.15252/emmm.201606975

[…] we used the circular binary segmentation algorithm (venkatraman & olshen, 2007) to segment genomic profiles and assign corresponding smoothed values of log r ratio and b allele frequency. the genome alteration print (gap) method was used to determine the ploidy of each sample, the level of contamination with normal cells, and the allele‐specific copy number of each segment (popova et al, […]

GAP institution(s)
Centre de Recherche, Institut Curie, Paris, France

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