GARFIELD specifications

Unique identifier:
OMICS_14270
Software type:
Package/Module
Restrictions to use:
None
Output format:
FILE.PREP, FILE.PERM
Programming languages:
C++, R
Computer skills:
Advanced
Stability:
Stable
Name:
GWAS Analysis of Regulatory or Functional Information Enrichment with LD correction
Interface:
Command line interface
Output data:
Genomic positions of pruned variants, p-values for association with the trait of interest, number of LD tags (r2>0.8), MAF, distance to the nearest TSS and binary representation of annotation information, enrichment analysis results for each annotation
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Version:
3.5
Maintained:
Yes

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GARFIELD support

Documentation

Maintainer

  • Nicole Soranzo <>

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Publications

Institution(s)

Human Genetics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK; MRC Integrative Epidemiology Unit, University of Bristol, Bristol, UK; Department of Haematology, University of Cambridge, Cambridge, UK; The National Institute for Health Research Blood and Transplant Unit in Donor Health and Genomics, University of Cambridge, Cambridge, UK

Funding source(s)

Wellcome Trust under awards WT098051 and WT091310; MRC Integrative Epidemiology Unit (Medical Research Council MC_UU_12013/3); EMBL-WTSI

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