GARFIELD specifications

Information


Unique identifier OMICS_14270
Name GARFIELD
Alternative name GWAS Analysis of Regulatory or Functional Information Enrichment with LD correction
Software type Package/Module
Interface Command line interface
Restrictions to use None
Output data Genomic positions of pruned variants, p-values for association with the trait of interest, number of LD tags (r2>0.8), MAF, distance to the nearest TSS and binary representation of annotation information, enrichment analysis results for each annotation
Output format FILE.PREP, FILE.PERM
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, R
License GNU General Public License version 3.0
Computer skills Advanced
Version 3.5
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Nicole Soranzo <>

GARFIELD article

GARFIELD institution(s)
Human Genetics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK; MRC Integrative Epidemiology Unit, University of Bristol, Bristol, UK; Department of Haematology, University of Cambridge, Cambridge, UK; The National Institute for Health Research Blood and Transplant Unit in Donor Health and Genomics, University of Cambridge, Cambridge, UK
GARFIELD funding source(s)
Wellcome Trust under awards WT098051 and WT091310; MRC Integrative Epidemiology Unit (Medical Research Council MC_UU_12013/3); EMBL-WTSI

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