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Number of citations per year for the bioinformatics software tool GARM

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GARM specifications


Unique identifier OMICS_01420
Alternative name Genome Assembler, Reconcilation and Merging
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes


No version available

Publication for Genome Assembler, Reconcilation and Merging

GARM citation


A comparative evaluation of genome assembly reconciliation tools

Genome Biol
PMCID: 5436433
PMID: 28521789
DOI: 10.1186/s13059-017-1213-3

[…] omosome 4. CISA did not produce chromosome 15 and GAA and GAM_NGS produced chromosome 15 with an unaligned sequence at the location of the insertion. As before, GAA produced two additional sequences. GARM did produce any merged assembly. Metassembler’s and MIX’s outputs were like the flawed input assembly. ZORRO split the assembly over structural variation breaking points. For 200 and 500 kbp, ZOR […]

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GARM institution(s)
Unidad Universitaria de Apoyo Bioinformatico, Universidad Nacional Autonoma de Mexico, Cuernavaca, Mexico

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