GASVPro pipeline

GASVPro specifications

Information


Unique identifier OMICS_00317
Name GASVPro
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A or some aligned read(s)
Input format SAM,BAM
Biological technology Illumina
Operating system Unix/Linux
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.4
Stability Stable
Source code URL https://code.google.com/archive/p/gasv/
Maintained Yes

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Documentation


Maintainers


  • person_outline Benjamin Raphael <>
  • person_outline Suzanne Sindi <>

Publication for GASVPro

GASVPro citation

2015
PMCID: 4647614

[…] nucleotide polymorphisms (snps) with seqmanngen11(dnastar) tool using 90 % of the snp carrying reads as the cutoff parameter for selection. the structural variation analysis was performed with gasvpro [17]., metabolite analysis was performed using the accella1250™ hplc system coupled with the benchtop es-ms orbitrap exactive™ (thermo fisher scientific, san jose, ca). a sample of 5 μl […]

GASVPro institution(s)
Center for Computational Molecular Biology, Brown University, Providence, RI, USA; Department for Molecular Biology, Cellular Biology and Biochemistry, Brown University, Providence, RI, USA; Department of Computer Science, Brown University, Providence, RI, USA
GASVPro funding source(s)
Supported by National Institutes of Health (R01 HG5690) and Burroughs Wellcome Career Award at the Scientific Interface.

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