GAT statistics

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Protocols

GAT specifications

Information


Unique identifier OMICS_10620
Name GAT
Alternative name Graph-Analysis Toolbox
Software type Toolkit/Suite
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline S. M. Hadi Hosseini

Publication for Graph-Analysis Toolbox

GAT citations

 (13)
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Brain Atrophy and Reorganization of Structural Network in Parkinson's Disease With Hemiparkinsonism

2018
Front Hum Neurosci
PMCID: 5881349
PMID: 29636671
DOI: 10.3389/fnhum.2018.00117
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[…] Modulated, normalized GM maps from the above voxel-based morphometry were implemented into graph analysis toolbox (GAT) (http://ncnl.stanford.edu/tools.html) (Hosseini et al., ). First, 116 ROIs including bilateral cortical, subcortical and cerebellar GM created using the Automatic Anatomic […]

library_books

Brain gray matter structural network in myotonic dystrophy type 1

2017
PLoS One
PMCID: 5667809
PMID: 29095898
DOI: 10.1371/journal.pone.0187343

[…] Graph theoretical analyses were performed on the regional covariance matrices using the Graph Analysis Toolbox (GAT) []. BrainNet Viewer was used for visualization of regional analyses []. The normalized GM images of DM1 patients and healthy controls were applied to GAT running in MATLAB […]

library_books

Gender differences in the structural connectome of the teenage brain revealed by generalized q sampling MRI

2017
PMCID: 5447512
PMID: 28580294
DOI: 10.1016/j.nicl.2017.05.014

[…] Graph theoretical analysis (GTA) was performed on the interregional connectivity matrix using the Graph Analysis Toolbox (GAT, Stanford University School of Medicine, Stanford, CA, USA), a Matlab-based package with graphical user interface that integrates the Brain Connectivity Toolbox (BCT) (, ). […]

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Regional brain network organization distinguishes the combined and inattentive subtypes of Attention Deficit Hyperactivity Disorder

2017
PMCID: 5447655
PMID: 28580295
DOI: 10.1016/j.nicl.2017.05.016
call_split See protocol

[…] Graph theoretical analyses were performed on these interregional connectivity matrices using the Brain Connectivity Toolbox (http://www.brain-connectivity-toolbox.net/) () and the Graph Analysis Toolbox (). […]

library_books

Assessment of brain functional connectome alternations and correlation with depression and anxiety in major depressive disorders

2017
PeerJ
PMCID: 5702252
PMID: 29181274
DOI: 10.7717/peerj.3147

[…] Neuroimaging Informatics Tools and Resources Clearinghouse, NITRC). Finally, we used the connectivity matrix to perform a graph theoretical analysis.Analyses of network properties were performed with Graph Analysis Toolbox (GAT; Stanford University School of Medicine, Stanford, CA, USA) (). Previous analysis produced a 90 × 90 association connectivity matrix for each individual. GAT extracted the […]

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Altered gray matter organization in children and adolescents with ADHD: a structural covariance connectome study

2016
PMCID: 5314130
PMID: 27824356
DOI: 10.1038/tp.2016.219
call_split See protocol

[…] Graph theoretical analyses were performed on the interregional covariance matrices using the Brain Connectivity Toolbox (http://www.brain-connectivity-toolbox.net/) and the Graph Analysis Toolbox. BrainNet viewer was used for visualization of regional analyses. […]

Citations

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GAT institution(s)
Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford, CA, USA
GAT funding source(s)
This work was supported by the National Institutes of Health Director’s New Innovator Award 1 DP2 OD004445-01 and K23 HD054720 and National Cancer Institute (K07 CA134639).

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