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GATHER specifications

Information


Unique identifier OMICS_18629
Name GATHER
Alternative name Gene Annotation Tool to Help Explain Relationships
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline Joseph Nevins

Publication for Gene Annotation Tool to Help Explain Relationships

GATHER citations

 (9)
library_books

miRNA Enriched in Human Neuroblast Nuclei Bind the MAZ Transcription Factor and Their Precursors Contain the MAZ Consensus Motif

2017
PMCID: 5573442
PMID: 28878619
DOI: 10.3389/fnmol.2017.00259

[…] nd compared between samples, yielding 189 mRNAs unique to Ago1, 435 unique to Ago2 and 657 transcripts detected in both pull-downs (Supplementary Table ); these lists were functionally analyzed using Gene Annotation Tool to Help Explain Relationships (GATHER) and the DAVID Functional Annotation Clustering (FAC) tool.In these undifferentiated neuronal cells Ago2-associated, nuclear miRNA targeted t […]

library_books

Systematic analysis of molecular mechanisms for HCC metastasis via text mining approach

2017
Oncotarget
PMCID: 5355149
PMID: 28108733
DOI: 10.18632/oncotarget.14692

[…] enes that co-appeared with these words in the same sentence will be counted. If a gene appeared several times in one sentence, it would be treated once. KEGG pathway analysis was performed on GATHER (Gene Annotation Tool to Help Explain Relationships, http://gather.genome.duke.edu/) [], and the threshold of P is 0.05.The protein-protein interaction (PPI) network was integrated with BisoGenet [], a […]

library_books

Genomic Contributors to Rhythm Outcome of Atrial Fibrillation Catheter Ablation – Pathway Enrichment Analysis of GWAS Data

2016
PLoS One
PMCID: 5117760
PMID: 27870913
DOI: 10.1371/journal.pone.0167008

[…] chment p-values incorporating functional SNP weights controlling for LD and gene length. Enrichment p-values < 0.05 were regarded statistically significant.For pathway enrichment analysis we used the Gene Annotation Tool to Help Explain Relationships (GATHER) [] and WEB-based Gene SeT AnaLysis Toolkit (WebGestalt) [] together with the databases provided by Kyoto Encyclopedia of Genes and Genomes ( […]

library_books

Genomic contributors to atrial electroanatomical remodeling and atrial fibrillation progression: Pathway enrichment analysis of GWAS data

2016
Sci Rep
PMCID: 5114680
PMID: 27857207
DOI: 10.1038/srep36630

[…] chment p-values incorporating functional SNP weights controlling for LD and gene length. Enrichment p-values < 0.05 were regarded statistically significant.For pathway enrichment analysis we used the Gene Annotation Tool to Help Explain Relationships (GATHER) and WEB-based Gene SeT AnaLysis Toolkit (WebGestalt) together with the databases provided by KEGG. Non-random over representation of genes f […]

library_books

Endometrial gene expression reveals compromised progesterone signaling in women refractory to embryo implantation

2014
PMCID: 4181418
PMID: 25248672
DOI: 10.1186/1477-7827-12-92

[…] iological processes that they may represent. In our analysis, we submitted our gene lists to the web-based tools DAVID (Database for Annotation, Visualization and Integrated Discovery) [] and GATHER (Gene Annotation Tool to Help Explain Relationships) [] for functional annotation analysis in order to gain an in-depth understanding of their biological themes, which otherwise would require laborious […]

library_books

Ontogeny of small RNA in the regulation of mammalian brain development

2014
BMC Genomics
PMCID: 4171549
PMID: 25204312
DOI: 10.1186/1471-2164-15-777

[…] f the 32 miRNA specific to the telencephalon at E12 and the 26 miRNA specific to the telencephalon at E19 were assessed for Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment using the Gene Annotation Tool to Help Explain Relationships (GATHER) online database. For the telencephalon-specific miRNA at E12 this revealed a number of significantly enriched pathways with relevance to neu […]

Citations

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GATHER institution(s)
Department of Molecular Genetics and Microbiology, Duke Institute for Genome Sciences and Policy, Duke University Medical Center, Durham, NC, USA
GATHER funding source(s)
Supported by postdoctoral fellowship #PF-05-047-01-GMC from the American Cancer Society; by NIH 5-U54-CA112952-03.

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