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Protocols

GAzer specifications

Information


Unique identifier OMICS_18762
Name GAzer
Alternative name Gene set AnalyZER
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input data Two tab-delimited text files (a gene expression data file and a class information file containing the class identifiers) to identify two groups.
Input format TSV
Operating system Unix/Linux, Windows
Programming languages R
Computer skills Medium
Stability No
Maintained No

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Publication for Gene set AnalyZER

library_books

GAzer: gene set analyzer.

2007 Bioinformatics
PMID: 17468122
DOI: 10.1093/bioinformatics/btm144

GAzer citations

 (13)
library_books

Breeding of lilies and tulips—Interspecific hybridization and genetic background—

2018
Breed Sci
PMCID: 5903980
PMID: 29681746
DOI: 10.1270/jsbbs.17097

[…] um, L. alexandrae and L. nobilissimum contributed to produce Oriental hybrid lilies. The production of these hybrid lilies is one of flower breeding’s greatest achievements. The Oriental hybrid ‘Star Gazer’ is the most important historical cultivar in this group because this is the first cultivar with an upright flower direction in Oriental hybrid lilies (). Modern lily breeding aimed at inter-sec […]

library_books

You Look Human, But Act Like a Machine: Agent Appearance and Behavior Modulate Different Aspects of Human–Robot Interaction

2017
Front Psychol
PMCID: 5572356
PMID: 28878703
DOI: 10.3389/fpsyg.2017.01393

[…] tute database; ) into a robot face (i.e., Meka S2 robot head) in steps of 10% using the software Fantamorph. Out of the morphing spectrum, the morph with 80% physical humanness was used as human-like gazer and the morph with 20% physical humanness as robot-like gazer. The left-and rightward gazing faces were created using Photoshop by shifting the irises and pupils in the eyes of the original face […]

library_books

Top Down LESA Mass Spectrometry Protein Analysis of Gram Positive and Gram Negative Bacteria

2017
J Am Soc Mass Spectrom
PMCID: 5594050
PMID: 28681361
DOI: 10.1007/s13361-017-1718-8

[…] ance was set to ±15 ppm. Putative hits, as well as any posttranslational modifications, were verified by narrowing down the search criteria and optimizing any remaining matches in ProSight’s Sequence Gazer, followed by manual peak assignment with an acceptance threshold of ±5 ppm.The protein sequence generated de novo from the unknown Staphylococcus species was searched by standard protein BLAST a […]

call_split

Insights into the molecular mechanisms of Polygonum multiflorum Thunb induced liver injury: a computational systems toxicology approach

2017
Acta Pharmacol Sin
PMCID: 5457689
PMID: 28239160
DOI: 10.1038/aps.2016.147
call_split See protocol

[…] o compare the final results.To obtain a global perspective of the associations between the targets and the hepatotoxic pathways, we determined the pathway enrichment by mapping the CTI targets to the Gene Set Analyzer (GAzer) of CTD. GAzer can generate KEGG and REACT pathways for groups of targets. All of the hepatotoxic pathways were selected to construct the target-pathway association (TPA) netw […]

call_split

The Unusual Resistance of Avian Defensin AvBD7 to Proteolytic Enzymes Preserves Its Antibacterial Activity

2016
PLoS One
PMCID: 4999073
PMID: 27561012
DOI: 10.1371/journal.pone.0161573
call_split See protocol

[…] ce and the delta mass feature deactivated. Post-translational modifications such as disulfide bridges, N-terminal pyroglutamic acid and C-terminal amidation were interpreted using the manual Sequence Gazer mode. Proposed results with a P score of < 0.05 were considered positively identified and structurally characterized with a minimal 5 fragment ions matching. Finally, RP-HPLC purification was pe […]

library_books

An avian perspective on simulating other minds

2016
PMCID: 4996884
PMID: 27287249
DOI: 10.3758/s13420-016-0230-5

[…] behavior-reading alone, without recourse to understanding what mental states, if any, may drive another’s behavior. For example, does following another’s gaze mean that a viewer understands that the gazer is seeing something, or does the viewer simply compute that the gazer is oriented toward a specific object and, statistically speaking, is more likely to interact with that goal object than with […]


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GAzer institution(s)
Korean BioInformation Center, KRIBB, Daejeon, Korea; Department of Applied Statistics, Yonsei University, Seoul, Korea; Molecular Virology Division, St. Luke’s-Roosevelt Hospital Center, New York, NY, USA; Human Genomics Laboratory, Genome Research Center, KRIBB, Daejeon, Korea
GAzer funding source(s)
Supported in part by KRIBB Research Initiative Program and 21c Frontier Functional Human Genome Project, Korea.

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