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GBM-BioDP specifications

Information


Unique identifier OMICS_27546
Name GBM-BioDP
Alternative name Glioblastoma Bio Discovery Portal
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Allowed
Maintained Yes

Maintainer


  • person_outline Uma Shankavaram

Publication for Glioblastoma Bio Discovery Portal

GBM-BioDP citations

 (3)
library_books

Immune evasion mediated by PD L1 on glioblastoma derived extracellular vesicles

2018
Sci Adv
PMCID: 5842038
PMID: 29532035
DOI: 10.1126/sciadv.aar2766

[…] mpliant with all applicable laws, regulations, and policies for the protection of human subjects, and necessary ethical approvals were obtained. Experimental and clinical data were analyzed using the Glioblastoma Bio Discovery Portal (https://gbm-biodp.nci.nih.gov/) (), as previously described (). Clinical data were downloaded from the TCGA data portal (https://tcga-data.nci.nih.gov/docs/publicati […]

library_books

Tumor derived fibulin 3 activates pro invasive NF kappa B signaling in glioblastoma cells and their microenvironment

2017
Oncogene
PMCID: 5570669
PMID: 28414309
DOI: 10.1038/onc.2017.109

[…] Optimal heatmap clustering was calculated using the R’s package NBClust. Molecular subtypes of GBM were identified in the TCGA dataset using profiles provided by the GBM Bio-Discovery Portal (http://gbm-biodp.nci.nih.gov). RNAseq data (Z scores) for intratumoral expression of EFEMP1 and RELA in histologically-defined, microdissected regions from 10 GBM specimens (total N=122 samples) was obtained […]

library_books

Metabolic/Proteomic Signature Defines Two Glioblastoma Subtypes With Different Clinical Outcome

2016
Sci Rep
PMCID: 4746700
PMID: 26857460
DOI: 10.1038/srep21557

[…] to the 3-Platform Aggregates used by Verhaak and colleagues. To study the relationships between RPPA endpoints associated with GSf- and GSr-like clusters and patient outcome in TCGA data we used the GBM-BioDP software platform (http://gbm-biodp.nci.nih.gov). Briefly, based on (phospho-)proteins that resulted significantly modulated between GSr- and GSf-like GSC clusters in our RPPA analysis, we g […]


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GBM-BioDP institution(s)
Radiation Oncology Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA
GBM-BioDP funding source(s)
Supported by Intramural Research Program of the National Institutes of Health, National Cancer Institute, Center for Cancer Research.

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