Genotyping by sequencing data analysis software tools
Genotyping by sequencing (GBS) is a next generation sequencing based method that takes advantage of reduced representation to enable high throughput genotyping of large numbers of individuals at a large number of SNP markers. The relatively straightforward, robust, and cost-effective GBS protocol is currently being applied in numerous species by a large number of researchers.
Source text:
(Glaubitz et al., 2014) TASSEL-GBS: a high capacity genotyping by sequencing analysis pipeline. PLoS One.
Base calling
31 tools
Read quality control
108 tools
Adapter trimming
107 tools
Read clustering
19 tools
Demultiplexing
19 tools
Quality control
12 tools
Genotype imputation
34 tools
Summary statistics
24 tools
Single SNP association
40 tools
Fine mapping
12 tools
Region-based association
7 tools
Association mapping
39 tools
Rare variant association
52 tools
Joint association
23 tools
Linkage disequilibrium assessment
25 tools
Haplotype association
19 tools
SNP prioritization
67 tools
Meta-analysis
33 tools
Power/sample size calculation
5 tools
