Genotyping by sequencing data analysis software tools

Genotyping by sequencing (GBS) is a next generation sequencing based method that takes advantage of reduced representation to enable high throughput genotyping of large numbers of individuals at a large number of SNP markers. The relatively straightforward, robust, and cost-effective GBS protocol is currently being applied in numerous species by a large number of researchers.

Source text:
(Glaubitz et al., 2014) TASSEL-GBS: a high capacity genotyping by sequencing analysis pipeline. PLoS One.

Data preprocessing

Data processing

Genome variant analysis

Genome-wide association study/Linkage/QTL

Workflows

Unclassified tools