GBS-SNP-CROP specifications


Unique identifier OMICS_14792
Alternative name GBS SNP Calling Reference Optional Pipeline
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data CASAVA-generated paired-end (R1, R2) or single-end (R1), Barcode-ID.
Input format FASTQ, TAR, GZ, TXT
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.0
Stability Stable
Requirements Java, Trimmomatic
Maintained Yes



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  • person_outline Iago Hale <>

GBS-SNP-CROP article

GBS-SNP-CROP institution(s)
College of Life Sciences and Agriculture, Department of Biological Sciences, University of New Hampshire, Durham, NH, USA; College of Life Sciences and Agriculture, Genetics Graduate Program, University of New Hampshire, Durham, NH, USA
GBS-SNP-CROP funding source(s)
This work is supported by the USDA National Institute of Food and Agriculture Multi-State Hatch Project NH 06611-R and by the New Hampshire Agricultural Experiment Station (Scientific Contribution Number 2626).

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