GC-Profile pipeline

GC-Profile specifications

Information


Unique identifier OMICS_23361
Name GC-Profile
Software type Application/Script
Interface Web user interface
Restrictions to use None
Input format FASTA
Output data A graph.
Programming languages Perl
Computer skills Basic
Maintained Yes

Maintainer


  • person_outline Chun-Ting Zhang <>

Publication for GC-Profile

GC-Profile citations

 (2)
2017
PMCID: 5357945

[…] of the distribution of core genes and unique genes, two large genomic islands have been detected (gi-i: from 3812417 to 4085811 bp and gi-ii: from 4171990 to 4395111 bp) in s. lydicus 103 based on gc-profile (fig. 1 and table s2). it is thought that streptomyces achieves the productivity of a wide variety of secondary metabolites by acquiring foreign biosynthetic enzyme genes […]

2016
PMCID: 5141477

[…] ‘upper’, ‘middle’ and ‘lower’ pathways for the carbaryl degradation in strain c5pp corroborates well with biochemical studies reported earlier17., the g+c profile viewer33 (http://tubic.tju.edu.cn/gc-profile/) revealed a skewing in the g+c content of supercontig-a (fig. 6a). the g+c content in the region 10629–36324 bp, which harbored ‘upper’ (carbaryl to salicylic acid) and ‘middle’ […]

GC-Profile institution(s)
Department of Physics, Tianjin University, Tianjin, China
GC-Profile funding source(s)
Supported by NNSF of China Grant No. 90408028.

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