GCV statistics

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Citations per year

Number of citations per year for the bioinformatics software tool GCV
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Tool usage distribution map

This map represents all the scientific publications referring to GCV per scientific context
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Associated diseases

This word cloud represents GCV usage per disease context
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Protocols

GCV specifications

Information


Unique identifier OMICS_24667
Name GCV
Alternative names Genome Context Viewer, lis_context_viewer
Software type Application/Script
Interface Application programming interface
Restrictions to use None
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0.1
Stability Stable
Maintained Yes

Download


download.png

Documentation


Maintainer


  • person_outline Andrew Farmer

Additional information


https://github.com/legumeinfo/lis_context_viewer/wiki

Information


Unique identifier OMICS_24667
Name GCV
Alternative names Genome Context Viewer, lis_context_viewer
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0.1
Stability Stable
Maintained Yes

Download


download.png

Versioning


No version available

Documentation


Maintainer


  • person_outline Andrew Farmer

Additional information


https://github.com/legumeinfo/lis_context_viewer/wiki

Publication for Genome Context Viewer

GCV citations

 (5)
library_books

Genome Context Viewer: visual exploration of multiple annotated genomes using microsynteny

2017
Bioinformatics
PMCID: 5925771
PMID: 29194466
DOI: 10.1093/bioinformatics/btx757

[…] contextualized functional annotation as a unit of search and comparison among sets of genomes spanning diverse taxonomic groups that may reside in a distributed set of databases.Here, we present the Genome Context Viewer (GCV), a web-based visual data-mining tool for dynamically identifying syntenic genomic segments and enabling interactive exploration of gene content similarities and differences […]

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STAT3/NF κB Regulated Lentiviral TK/GCV Suicide Gene Therapy for Cisplatin Resistant Triple Negative Breast Cancer

2017
Theranostics
PMCID: 5327640
PMID: 28255357
DOI: 10.7150/thno.16827
call_split See protocol

[…] Tomography (PET) imaging with 9-[4-[18F]fluoro-3-(hydroxymethyl)butyl]guanine ([18F]FHBG) was performed at day 3 and day 10 during the in vivo gene therapy studies, corresponding to before and after GCV treatment. [18F]FHBG is one of the PET report probe for imaging herpes simplex virus type 1 thymidine kinase (HSV1-TK) and mutant HSV1-sr39tk report gene . [18F]FHBG was synthesized by nucleophili […]

library_books

Linking Bacillus cereus Genotypes and Carbohydrate Utilization Capacity

2016
PLoS One
PMCID: 4896439
PMID: 27272929
DOI: 10.1371/journal.pone.0156796

[…] ly/domain databases (using e.g. InterPro []), enzyme databases (using e.g. Brenda []) and pathway databases (using e.g. KEGG []). Gene cassettes and gene synteny were visualized using MGcV (Microbial Genome context Viewer) []. Details of the carbohydrate utilization cassettes in the OG database can be found in and Tables. […]

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Phylogenetically Driven Sequencing of Extremely Halophilic Archaea Reveals Strategies for Static and Dynamic Osmo response

2014
PLoS Genet
PMCID: 4230888
PMID: 25393412
DOI: 10.1371/journal.pgen.1004784
call_split See protocol

[…] on factor expansions, GC-bias analysis, building of molecular marker sets and phylogenetically informed re-annotation. These annotations can be accessed as a loadable “popular genome set” through the genome context viewer JContextExplorer as well as a custom MySQL database (see for instructions). The RAST annotation system was particularly useful in enabling comparison of our genomes with previo […]

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Suicide Gene Reveals the Myocardial Neovascularization Role of Mesenchymal Stem Cells Overexpressing CXCR4 (MSCCXCR4)

2012
PLoS One
PMCID: 3460871
PMID: 23029422
DOI: 10.1371/journal.pone.0046158
call_split See protocol

[…] pCDH-N-TK or pCDH-VE-TK were incubated to ECs (ECN-TK or ECVE-TK) and MSCs (MSCN-TK or MSCVE-TK), respectively. And then the cells (MSCs, ECs, cardiomyocytes, and myoblasts) were treated with 100 µM GCV (PBS as vehicle) for 4 days. The number of viable cells identified by GFP or immunostaining was counted under the microscope at 200-magnification. […]


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GCV institution(s)
Gianforte School of Computing, Montana State University, Bozeman, MT, USA; National Center for Genome Resources, Santa Fe, NM, USA
GCV funding source(s)
Supported by U.S. Department of Agriculture Agricultural Research Service project funding for the Legume Information System and the National Science Foundation [grant number IOS-1444806].

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