GCView protocols

View GCView computational protocol

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chevron_left Amino acid sequence homology search chevron_right
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Associated diseases

Associated diseases

GCView specifications

Information


Unique identifier OMICS_24527
Name GCView
Interface Web user interface
Restrictions to use None
Input data A protein sequence, a protein GI or UniProt identifiers and forwarded homology search jobs.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Dirk Linke <>

Publication for GCView

GCView in pipelines

 (2)
2017
PMCID: 5727363
PMID: 28857514
DOI: 10.1002/mbo3.515

[…] and webmga programs (markowitz et al., ; wu, zhu, fu, niu, & li, ; markowitz et al., ; overbeek et al., ; galperin, makarova, wolf, & koonin, ). a circular genome map was generated using gcview based on all predicted cds information, trnas/rrnas, gc content, and gene cluster information (grant & stothard, ). the multidrug resistance genes were predicted using both card database […]

2015
PMCID: 4676552
PMID: 26582551
DOI: 10.1264/jsme2.ME15080

[…] predictions of gene regions and annotation were performed using migap (http://www.migap.org/index.php/en/about-migap). a circular genome map showing the gc skew and gc content was created using the gcview server (http://stothard.afns.ualberta.ca/cgview_server)., the genome sequences of bradyrhizobium sp. sutn9-2 (accession number laxe00000000) were compared with the whole genome of b. […]


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GCView in publications

 (2)
PMCID: 5727363
PMID: 28857514
DOI: 10.1002/mbo3.515

[…] and webmga programs (markowitz et al., ; wu, zhu, fu, niu, & li, ; markowitz et al., ; overbeek et al., ; galperin, makarova, wolf, & koonin, ). a circular genome map was generated using gcview based on all predicted cds information, trnas/rrnas, gc content, and gene cluster information (grant & stothard, ). the multidrug resistance genes were predicted using both card database […]

PMCID: 3953254
PMID: 24369174
DOI: 10.1074/jbc.M113.513275

[…] yaji, yp_488704.1/gi|388476518. strains (), primers (), and plasmids () used in this study are listed below., the genomic context of sadb and its paralogs was investigated using gcview () in the mpi bioinformatics toolkit (). sequences homologous to sadb or yaji were collected from up to three rounds of psi-blast () and forwarded to gcview for genomic context lookup […]


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GCView institution(s)
Max Planck Institute for Developmental Biology, Protein Evolution, Tubingen, Germany
GCView funding source(s)
Supported by the Departmental funding of the Max Planck Society.

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