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GDA specifications

Information


Unique identifier OMICS_29330
Name GDA
Alternative name Genetic Data Analysis
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Windows
Computer skills Medium
Version 1.1
Stability Stable
Maintained No

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Additional information


https://phylogeny.uconn.edu/software/

GDA citations

 (40)
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Population structure of Venturia inaequalis, a causal agent of apple scab, in response to heterogeneous apple tree cultivation

2018
BMC Evol Biol
PMCID: 5775622
PMID: 29351730
DOI: 10.1186/s12862-018-1122-4
call_split See protocol

[…] , the mean number of alleles per locus and the number of private alleles (i.e., alleles that were found only in a single population among a broader collection of populations) were estimated using the GDA, allelic richness (calculated as the average number of alleles per locus) and unbiased average gene diversity (HD, []) using FSTAT 2.9.3.2 [], and allele frequency using ARLEQUIN 3.5.1.2 [] progra […]

call_split

Differential effects of hydrocortisone, prednisone, and dexamethasone on hormonal and pharmacokinetic profiles: a pilot study in children with congenital adrenal hyperplasia

2016
PMCID: 5036261
PMID: 27688786
DOI: 10.1186/s13633-016-0035-5
call_split See protocol

[…] d to determine directionality. As this was an exploratory analysis, any association with a p-value ≤ 0.05 was considered statistically significant. The Bonferroni justification was not applied in the genetic data analysis. The genetic data analyses were conducted in PLINK (http://pngu.mgh.harvard.edu/purcell/plink/). […]

call_split

Genetic diversity of lactase persistence in East African populations

2016
BMC Res Notes
PMCID: 4700599
PMID: 26728963
DOI: 10.1186/s13104-015-1833-1
call_split See protocol

[…] tch volunteers. Isolation was performed using the Gentra Pure Gene Blood kit (Qiagen, Venlo, The Netherlands) following the manufacturer’s protocol. Data analysis was performed using Arlequin v.3 and Genetic Data Analysis v.1.0 programs [, ]. The data set supporting the results of this article summarized in the Additional file of this article. […]

library_books

The Genetic Relationship between Leishmania aethiopica and Leishmania tropica Revealed by Comparing Microsatellite Profiles

2015
PLoS One
PMCID: 4511230
PMID: 26196393
DOI: 10.1371/journal.pone.0131227

[…] populations (F ST values) were calculated using MSA 4.05. The mean number of alleles (A), observed (H o) and expected (H e) heterozygosity and the inbreeding coefficients (F IS) were determined using GDA 1.1[]. […]

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Multi Approaches Analysis Reveals Local Adaptation in the Emmer Wheat (Triticum dicoccoides) at Macro but not Micro Geographical Scale

2015
PLoS One
PMCID: 4368821
PMID: 25793512
DOI: 10.1371/journal.pone.0121153
call_split See protocol

[…] bility within and among populations/habitats was investigated by an analysis of molecular variance (AMOVA) using GENALEX version 6.0 [], and Weir and Cockerham's (1984) F-statistics as implemented in GDA []. The results were very similar and therefore for multilocus population pairwise F ST only the latter are presented. We also estimated population differentiation by the D measure []. D values we […]

library_books

The 844 G>A PAI 1 Polymorphism Is Associated with Acute Coronary Syndrome in Mexican Population

2015
PMCID: 4350946
PMID: 25788758
DOI: 10.1155/2015/460974

[…] SPSS statistical package version 20.0, Excel 2010, and Genetic Data Analysis [] were used for the statistical analysis. Continuous variables were expressed as means ± standard deviation (SD). The Kolmogorov-Smirnov test and sample size were considered in […]

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