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GDV specifications

Information


Unique identifier OMICS_32155
Name GDV
Alternative name Genome Database for Vaccinium
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Taxon


  • Plants and Fungi
    • Vaccinium macrocarpon

GDV citations

 (3)
library_books

Genome scale examination of NBS encoding genes in blueberry

2018
Sci Rep
PMCID: 5821885
PMID: 29467425
DOI: 10.1038/s41598-018-21738-7

[…] Assembly and annotation of the blueberry genome v1 was downloaded from the Genome Database for Vaccinium (GDV, https://www.vaccinium.org). The complete set of NBS-encoding genes was identified in the draft genome of blueberry using a reiterative process. First, a set of NBS […]

library_books

Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases

2017
PMCID: 5727400
DOI: 10.1093/database/bax092

[…] splay module provides the appropriate online data pages. These Tripal extension modules, along with the Tripal core module, have been used in the construction of the GDR, CottonGen, CSFL, CGD and the Genome Database for Vaccinium (https://www.vaccinium.org/). These open-source Tripal extension modules with usage documentation can be found in the Tripal organization’s GitHub repository. They can al […]

library_books

Generation and analysis of blueberry transcriptome sequences from leaves, developing fruit, and flower buds from cold acclimation through deacclimation

2012
BMC Plant Biol
PMCID: 3378433
PMID: 22471859
DOI: 10.1186/1471-2229-12-46

[…] es shorter than 120 nt were removed from the total assembled 454 sequences, leaving 87,071 unique 454 transcript sequences, which were analyzed using the online SSR tool (SSR Server) available at the Genome Database for Vaccinium (GDV, http://www.vaccinium.org). SSR Server identifies simple sequence repeats using user-specified motif parameters and generates an EXCEL file containing the identified […]

Citations

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GDV funding source(s)
Supported by the USDA National Research Support Project (NRSP10), Plants for Human Health Institute at North Carolina State University and Washington State University.

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