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Protocols

GDV specifications

Information


Unique identifier OMICS_23392
Name GDV
Alternative name Genome Data Viewer
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

GDV citations

 (5)
call_split

Genome Wide Association Studies Identify Candidate Genes for Coat Color and Mohair Traits in the Iranian Markhoz Goat

2018
Front Genet
PMCID: 5893768
PMID: 29670642
DOI: 10.3389/fgene.2018.00105
call_split See protocol

[…] m from . Putative candidate gene(s) within one million base pairs up or down stream or within LD blocks of significantly associated SNPs were identified based on the GCF-001704415.1(ARS1) assembly in Genome Data Viewer on National Center for Biotechnology Information (NCBI) (). […]

call_split

GenomeLandscaper: Landscape analysis of genome fingerprints maps assessing chromosome architecture

2018
Sci Rep
PMCID: 5773709
PMID: 29348569
DOI: 10.1038/s41598-018-19366-2
call_split See protocol

[…] e the 1.30-Mbp target segment (Supplementary Dataset ) against the newest assembly GRCh38p10 (GCF_000001405.36). The UCSC Human BLAT analysis indicates a match in centromeric region (Fig. ). The NCBI Genome Data Viewer (Fig. ) illustrates that it fits in a broad region of GRCh38p10.chrY with three blocks (Fig. ): Block I (227.10 Kbp, from 10,316,945 bp to 10,544,039 bp), Block II (100.15 Kbp, from […]

library_books

Whole Genome Sequencing of the Braconid Parasitoid Wasp Fopius arisanus, an Important Biocontrol Agent of Pest Tepritid Fruit Flies

2017
PMCID: 5555450
PMID: 28584080
DOI: 10.1534/g3.117.040741

[…] TP site for data download is at ftp://ftp.ncbi.nlm.nih.gov/genomes/Fopius_arisanus/, a species-specific BLAST page at https://www.ncbi.nlm.nih.gov/genome/seq/BlastGen/BlastGen.cgi?taxid=64838, NCBI’s Genome Data Viewer at https://www.ncbi.nlm.nih.gov/genome/gdv/?org=fopius-arisanus and overview of release 100 annotations at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Fopius_arisanus/100/. C […]

library_books

Viewing RNA seq data on the entire human genome

2017
F1000Res
PMCID: 5605993
PMID: 28979763
DOI: 10.5256/f1000research.10524.r22368

[…] rom different tissues. Filters for those different tissues could also be added as filters in the display. The resulting genome-wide visualizations could then be embedded in genome browsers, e.g. NCBI Genome Data Viewer ( ), or any genomics-oriented application that supports HTML, CSS, and JavaScript.The prototype implemented in the hackathon only supports RNA-seq datasets from SRA that are already […]

library_books

Silencing of cryptic prophages in Corynebacterium glutamicum

2016
Nucleic Acids Res
PMCID: 5137423
PMID: 27492287
DOI: 10.1093/nar/gkw692

[…] The output was mapped to accession BX927147 as C. glutamicum reference genome (). For peak detection the resulting mapping coverage of each sample was exported and imported into the in-house software Genome Data Viewer (unpublished). A peak was automatically annotated if the coverage of a region is above the 3-fold average of the averaged genome coverage. All peaks were inspected and confirmed man […]

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