GECA statistics

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Associated diseases

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GECA specifications

Information


Unique identifier OMICS_07044
Name GECA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

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Information


Unique identifier OMICS_07044
Name GECA
Interface Web user interface
Restrictions to use None
Programming languages Perl
Computer skills Basic
Stability Stable
Maintained Yes

Publication for GECA

GECA in publications

 (3)
PMCID: 4824169
PMID: 26865071
DOI: 10.1093/gbe/evw015

[…] and tribolium castaneum. we assembled a final data set of 166 opsin sequences for analysis. opsin intron/exon structure predictions were generated using a homology-based method with the program geca (). additionally, to gain a picture of the functional opsin number in each species, we predicted the number of transmembrane structure using topcons (); opsin sequences predicted to have either […]

PMCID: 4419795
PMID: 25769696
DOI: 10.1093/gbe/evv048

[…] together with the corresponding genomic sequences of all identified genes were determined with scipio (). the intron/exon organization of the different families was verified with ciwog (), and geca () to support the correct annotation., graphical presentation of gene localization on chromosomes and linkage between genes were produced using mapchart v2.1 ()., gene family expansion […]

PMCID: 4080199
PMID: 24990771
DOI: 10.1038/srep05562

[…] illustrative comparison of amino acid similarity for mcf1, mcf2 and e. typhina subsp. poae ps1-mcf protein was performed using gene evolution and conservation analysis (geca) (; http://peroxibase.toulouse.inra.fr/tools/geca_input_demo.php)., to identify genes in addition to mcm7 and tsr1 for use in the phylogenetic analyses, the funybase genome database […]


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GECA institution(s)
Université de Toulouse, UPS, UMR 5546, Laboratoire de Recherche en Sciences Végétales, Auze ville, Castanet-Tolosan, France

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