GeConT pipeline

GeConT specifications

Information


Unique identifier OMICS_24533
Name GeConT
Alternative names Gene Context Tool, GCT
Interface Web user interface
Restrictions to use None
Programming languages Perl
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Enrique Merino <>

Additional information


http://operons.ibt.unam.mx/gctNG/help.jsp

Publications for Gene Context Tool

GeConT IN pipelines

 (2)
2013
PMCID: 4145622
PMID: 28324476
DOI: 10.1007/s13205-013-0164-y

[…] and blastx were used to search for nucleotide sequences and derivative amino acid sequences, respectively., gene context analysis of sidb gene of rhizobium strain bicc 651 was carried out using the gecont programme. the program allowed comparison of adjacent genes of sidb and visualization of genomic context of sidb homologue in the genomes of other organisms. the program is available at: […]

2013
PMCID: 4145622
PMID: 28324476
DOI: 10.1007/s13205-013-0164-y

[…] allowed comparison of adjacent genes of sidb and visualization of genomic context of sidb homologue in the genomes of other organisms. the program is available at: http://www.ibt.unam.mx/biocomputo/gecont.html (ciria et al. 2004)., evolutionary analyses were conducted using the software mega5 (tamura et al. 2011). multiple sequence alignment was carried out using a clustalw and evolutionary […]

GeConT institution(s)
Departmento de Microbiologıa Molecular, Instituto de Biotecnologıa, Universidad Nacional Autonoma de Mexico, Cuernavaca, Mexico; The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK; Department of Biology, Wilfrid Laurier University, Waterloo, ON, Canada
GeConT funding source(s)
Supported by Natural Sciences and Engineering Research Council of Canada (NSERC); Sanger Institute Postdoctoral Fellowship; Consejo Nacional de Ciencia y Tecnologıa (CONACyT) [60127-Q], PAPIIT IN212708 grants and Macroproyecto de Tecnologıas de la informacion y la computacion-UNAM.

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