GEDI specifications

Information


Unique identifier OMICS_17778
Name GEDI
Alternative name Genotype Error Detection and Imputation
Software type Package/Module
Interface Command line interface
Restrictions to use None
Output data Several output files depending on the specified commands: summary statistics for each of performed step, the prefix of the population genotype file, all SNP genotypes at the end of GEDI's analysis, Mendelian inconsistencies if any discovered and corrected by GEDI, Mendelian consistent errors if any that pass the detection threshold in -ED, missing genotypes if any imputed by -MDR, file containing genotypes imputed by -IMP and file containing genotypes phased by -PHASE.
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0.3
Stability Stable
Source code URL https://dna.engr.uconn.edu/~software/GEDI/gedi-1.0.3.tar.gz
Maintained Yes

Versioning


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Documentation


Maintainer


Additional information


http://arxiv.org/abs/0911.1765

Publication for Genotype Error Detection and Imputation

GEDI institution(s)
Computer Science and Engineering Department, University of Connecticut, Storrs, CT, USA
GEDI funding source(s)
Supported in part by NSF Career award IIS-0546457 and NSF award DBI-0543365.

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