gEMpicker statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool gEMpicker
info

Tool usage distribution map

This map represents all the scientific publications referring to gEMpicker per scientific context
info info

Associated diseases

info

Popular tool citations

chevron_left Particle picking chevron_right
Want to access the full stats & trends on this tool?

Protocols

gEMpicker specifications

Information


Unique identifier OMICS_15685
Name gEMpicker
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Programming languages C, C++
Computer skills Advanced
Stability Stable
Requirements
Boost, FFTW, CUDA Toolkit
Maintained Yes

Download


download.png

Versioning


No version available

Maintainer


  • person_outline Thai Hoang

Additional information


A registration is needed to access to tools.

Publication for gEMpicker

gEMpicker citations

 (2)
call_split

Structure–function insights reveal the human ribosome as a cancer target for antibiotics

2016
Nat Commun
PMCID: 5052680
PMID: 27665925
DOI: 10.1038/ncomms12856
call_split See protocol

[…] (or 3.5 ē Å−2 per frame). Images in the stack were aligned using the whole image motion correction method described in ref. . Particles (159,000) were picked automatically using the in-house software gEMpicker and the contrast transfer function of every image was determined using CTFFIND4 (ref. ) in the RELION workflow. For the first steps of refinement, images were coarsened by 2 (C2 images) and […]

call_split

Structure of the initiation competent RNA polymerase I and its implication for transcription

2016
Nat Commun
PMCID: 4947174
PMID: 27418187
DOI: 10.1038/ncomms12126
call_split See protocol

[…] erence-free classification in RELION to produce representative two-dimensional (2D) class averages that were used as cross-correlation references for automated particle picking in all frames with the gEMpicker software. The full data set was then partitioned in 2D using RELION to eliminate images containing contamination or bad particles. Structure refinement was done in RELION using a starting mo […]


Want to access the full list of citations?
gEMpicker institution(s)
Inria Nancy - Grand Est, Villers-lès-Nancy, France; IGBMC, Illkirch, France
gEMpicker funding source(s)
This work was funded in part by CNRS and by Agence Nationale de la Recherche, grant reference ANR-MNU-006-02.

gEMpicker reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review gEMpicker