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GEMS Launcher specifications

Information


Unique identifier OMICS_26687
Name GEMS Launcher
Software type Toolkit/Suite
Interface Web user interface
Restrictions to use License purchase required
Computer skills Basic
Stability Stable
Free trial Yes
Registration required Yes
Maintained Yes

Maintainer


  • person_outline GGA Team

Additional information


http://www.genomatix.de/online_help/help_gems/gems_main.html GEMS Launcher is part of the Genomatix Software Suite.

GEMS Launcher citations

 (8)
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Naturally Occurring Deletion Mutants of the Pig Specific, Intestinal Crypt Epithelial Cell Protein CLCA4b without Apparent Phenotype

2015
PLoS One
PMCID: 4608703
PMID: 26474299
DOI: 10.1371/journal.pone.0140050
call_split See protocol

[…] bl.org) and aligned using Clustal Omega (http://www.ebi.ac.uk/Tools/msa/clustalo/). Potential conserved binding sites for transcription factors were determined by Genomatix ElDorado/Gene2Promoter and GEMS Launcher software packages (Genomatix, Munich, Germany), according to Wünsch and colleagues []. Repetitive elements identified by RepeatMasker (http://www.repeatmasker.org) were excluded from the […]

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Bioinformatics Identification of Modules of Transcription Factor Binding Sites in Alzheimer's Disease Related Genes by In Silico Promoter Analysis and Microarrays

2011
PMCID: 3090009
PMID: 21559189
DOI: 10.4061/2011/154325
call_split See protocol

[…] th Genomatix software (Munich/Germany). All promoter sequences are derived from the promoter sequence retrieval database ElDorado (Release 4.9, Human Genome NCBI build 37/hg19). The DiAlignTF task of GEMS Launcher was used to check for conserved TFBSs between the human and mouse APP promoter sequence (Matrix Family Library, Version 8.0, Vertebrates; Genomatix: 690 matrices from 162 families). The […]

library_books

Data recovery and integration from public databases uncovers transformation specific transcriptional downregulation of cAMP PKA pathway encoding genes

2009
BMC Bioinformatics
PMCID: 2762058
PMID: 19828069
DOI: 10.1186/1471-2105-10-S12-S1

[…] stream from the transcription start site (TSS), automatically assigned to genes on the basis of 5' cap-site databases integrated into promoter identification program - were identified using Eldorado (gems launcher, Genomatix []) and the Genomatix Promoter Database. TFBS in the promoter regions were identified by using ModelInspector and the Genomatix Promoter Database, comprising a total of 519 ma […]

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Production of the Novel Two Peptide Lantibiotic Lichenicidin by Bacillus licheniformis DSM 13

2009
PLoS One
PMCID: 2727956
PMID: 19707558
DOI: 10.1371/journal.pone.0006788
call_split See protocol

[…] The GC content was determined on the Genomatix homepage using the GEMS launcher (http://www.genomatix.de/cgi-bin/tools/tools.pl). The potential chymotrypsin cleavage site in Licβ was observed using the Expasy PeptideCutter Tool (http://www.expasy.ch/tools/peptidecut […]

library_books

Stronger inflammatory/cytotoxic T cell response in women identified by microarray analysis

2009
Genes Immun
PMCID: 2735332
PMID: 19279650
DOI: 10.1038/gene.2009.12

[…] cted using men as the control, and a false discovery rate (FDR) ≤ 4% was applied to identify differentially expressed genes. Microarray data mining was performed using BiblioSphere, Gene2Promoter and GEMS-Launcher applications of the Genomatix software suite, Gene Ontology (GO) classifications were performed using the BiblioSphere Biological Process filter. To identify potential Estrogen Response […]

library_books

An optimized procedure for the design and evaluation of Ecotilling assays

2008
BMC Genomics
PMCID: 2586031
PMID: 18973671
DOI: 10.1186/1471-2164-9-510

[…] tic support.The effect of sequence variations on putative transcription factor binding sites can be assessed using SNPInspector, MatInspector [], ModelInspector [] and other tools from the Genomatix' GEMS Launcher.Possible effects on miRNA binding sites can be estimated with the web-tools TARGETSCAN [], PATROCLES [] and polymiRTS [].The potential functional relevance of the region surrounding an i […]

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GEMS Launcher institution(s)
Intrexon Bioinformatics Germany GmbH, Munich, Germany

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