GEMSiRV statistics

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Citations per year

Number of citations per year for the bioinformatics software tool GEMSiRV

Tool usage distribution map

This map represents all the scientific publications referring to GEMSiRV per scientific context
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GEMSiRV specifications


Unique identifier OMICS_05180
Alternative name GEnome-scale Metabolic model Simulation, Reconstruction and Visualization
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Maintained Yes


No version available

Publication for GEnome-scale Metabolic model Simulation, Reconstruction and Visualization

GEMSiRV citations


Computational Approaches for Microalgal Biofuel Optimization: A Review

Biomed Res Int
PMCID: 4189764
PMID: 25309916
DOI: 10.1155/2014/649453

[…] ore, automation of the process has been of interest. A limited number of software tools for automated reconstruction are currently available (some examples are given in ); for instance, AUTOGRAPH [], GEMSiRV [], MicrobesFlux [], MetRxn [], Model SEED [, ], SuBliMinaL Toolbox [], FAME [], and RAVEN Toolbox [] can be named. A systematic comparison between some of these platforms can be found in []. […]


Modeling the Differences in Biochemical Capabilities of Pseudomonas Species by Flux Balance Analysis: How Good Are Genome Scale Metabolic Networks at Predicting the Differences?

Sci World J
PMCID: 3953581
PMID: 24707203
DOI: 10.1155/2014/416289

[…] tabolism of an organism to a machine-readable format. There are various ways to reconstruct a model ranging from bottom up, totally manual approach [] to the semiautomated process such as rBioNet [], GEMSiRV [], and RAVEN []. Available genome-scale metabolic network models have a wide spectrum from bacteria [–], to archaea [], and to mammals and human [–].The common point of the all reconstruction […]

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GEMSiRV institution(s)
Division of Biostatistics and Bioinformatics, Institute of Population Health Sciences, National Health Research Institutes, Zhunan, Taiwan, China

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