GEMSiRV specifications


Unique identifier OMICS_05180
Alternative name GEnome-scale Metabolic model Simulation, Reconstruction and Visualization
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Maintained Yes


No version available

Publication for GEnome-scale Metabolic model Simulation, Reconstruction and Visualization

GEMSiRV citations


Computational Approaches for Microalgal Biofuel Optimization: A Review

Biomed Res Int
PMCID: 4189764
PMID: 25309916
DOI: 10.1155/2014/649453

[…] ore, automation of the process has been of interest. A limited number of software tools for automated reconstruction are currently available (some examples are given in ); for instance, AUTOGRAPH [], GEMSiRV [], MicrobesFlux [], MetRxn [], Model SEED [, ], SuBliMinaL Toolbox [], FAME [], and RAVEN Toolbox [] can be named. A systematic comparison between some of these platforms can be found in []. […]


Modeling the Differences in Biochemical Capabilities of Pseudomonas Species by Flux Balance Analysis: How Good Are Genome Scale Metabolic Networks at Predicting the Differences?

Sci World J
PMCID: 3953581
PMID: 24707203
DOI: 10.1155/2014/416289

[…] tabolism of an organism to a machine-readable format. There are various ways to reconstruct a model ranging from bottom up, totally manual approach [] to the semiautomated process such as rBioNet [], GEMSiRV [], and RAVEN []. Available genome-scale metabolic network models have a wide spectrum from bacteria [–], to archaea [], and to mammals and human [–].The common point of the all reconstruction […]

GEMSiRV institution(s)
Division of Biostatistics and Bioinformatics, Institute of Population Health Sciences, National Health Research Institutes, Zhunan, Taiwan, China

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