GemTools protocols

GemTools specifications

Information


Unique identifier OMICS_02079
Name GemTools
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

Subtool


  • clusterGem

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Versioning


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Documentation


Maintainer


  • person_outline Bert Klei <>

Publication for GemTools

GemTools IN pipelines

 (2)
2017
PMCID: 5511362
PMID: 28717391
DOI: 10.1111/eva.12487

[…] run were processed using the manufacturer's software real time analysis (rta 1.13.48, hcs 1.5.15.1) and followed by generation of fastq sequence files by casava. rna‐seq reads were aligned with the gemtools rna‐seq pipeline v1.7 (http://gemtools.github.io), which is based on the gem mapper (marco‐sola, sammeth, guigo, & ribeca, 2012). the mapping is exhaustive, which means that the mapper […]

2017
PMCID: 5511362
PMID: 28717391
DOI: 10.1111/eva.12487

[…] software real time analysis (rta 1.13.48, hcs 1.5.15.1) and followed by generation of fastq sequence files by casava. rna‐seq reads were aligned with the gemtools rna‐seq pipeline v1.7 (http://gemtools.github.io), which is based on the gem mapper (marco‐sola, sammeth, guigo, & ribeca, 2012). the mapping is exhaustive, which means that the mapper searches for all possible mappings […]

GemTools institution(s)
Department of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA; Department of Statistics, Carnegie Mellon University, Pittsburgh, PA, USA
GemTools funding source(s)
Supported by the National Institutes of Health grant MH057881.

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